PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 61701
Common NameMICPUCDRAFT_61701
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family GATA
Protein Properties Length: 429aa    MW: 43314.5 Da    PI: 9.7855
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
61701genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.26e-15293325133
   GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
            C+nCg+t+Tp WR++  g  +LCnaCGly +k+
  61701 293 CVNCGATQTPFWRKERTGGGSLCNACGLYLAKN 325
            *****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011416.263287345IPR000679Zinc finger, GATA-type
SMARTSM004016.2E-11287338IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-13287336No hitNo description
Gene3DG3DSA:3.30.50.102.7E-17289336IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.35E-13292339No hitNo description
PROSITE patternPS003440293318IPR000679Zinc finger, GATA-type
PfamPF003201.1E-12293325IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MAPPAARTAN RPHAVGSLGG NMHAPSTSAR ADAKEEHTNK MKATGRQKAD IAADTLRALA  60
TTATTYKPSP SKSAAKDATP TSKPAMPPIA PAPSAFAPGA FPAFPPLGAM PPGAAPPHGG  120
FPIGLAAAAA AMQQQQQQQQ QRPPPPGDAS QQQQQQQQQQ QQQQQQQQQQ QWNALLQYYA  180
CYSYYLCNGA PPRPGTTGGA GAAAGGAGKM MMPGGFPMLN HLNPAAMAAA AAAMQHPPPL  240
IHAPTHSARG GKGAYGMKRE RASSGSDEDS GSGSAGGGSK RKRRGSGNEC KTCVNCGATQ  300
TPFWRKERTG GGSLCNACGL YLAKNDAPRP AMLWRRGGGG DVATTTATTT AATAETATAP  360
AETAPAETAP DATAKVDAPV AADAPAATDA PAPVAAATTE ETEKVPLPDG PTKPVVAAPG  420
TPPSPKPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003055185.10.0predicted protein
TrEMBLC1MIS60.0C1MIS6_MICPC; Predicted protein
STRINGXP_003055185.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41981111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45170.18e-06GATA transcription factor 14
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]