PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 61323 | ||||||||
Common Name | MICPUCDRAFT_61323 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | G2-like | ||||||||
Protein Properties | Length: 428aa MW: 45316.2 Da PI: 5.4426 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 99.6 | 2.2e-31 | 152 | 206 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtpeLH+ Fv+av++LGG + AtPk i++lm+v+g++++hvkSHLQkYRl 61323 152 KQRLRWTPELHKMFVDAVKRLGGLDLATPKGIMQLMDVEGMSIQHVKSHLQKYRL 206 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.947 | 149 | 209 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-29 | 150 | 207 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.66E-17 | 151 | 207 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.8E-24 | 152 | 207 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.6E-7 | 154 | 205 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 7.7E-10 | 380 | 422 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MTRMSGIEDD SFSYSFLLIS GQLRDPTRLT PRPQTSSAPL GAGGGAAAAS GMNTSGTFWP 60 SDLDLDLESS DFLDSLLLGG EMMTTQQQHH HAGDERLGHG PVPLGARAAG EDHDPRVVLA 120 ERDAGDGLLP RALADERREP VARAVVASNN NKQRLRWTPE LHKMFVDAVK RLGGLDLATP 180 KGIMQLMDVE GMSIQHVKSH LQKYRLQDSG GGASEFRVSP DASASGKRPR SEEDDAGGNG 240 KDGNNSAGKT RRRPSAAERS AARLRAAEEK AREERDAARS MAAAAAAAAA AAVERQNVEL 300 ALLTGDAAGA RDALEMSSHH AASHVGGAYD DVLDLVAGPG ESGDGDGAWG DVLHDHAIVG 360 AAGDDVGLVD DVGSDPEAAA AMLKQLELQK KLHEHLMSQR RLQQQVEAHG VYLETILDQQ 420 KRRRGVE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-19 | 152 | 205 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-19 | 152 | 205 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-19 | 152 | 205 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-19 | 152 | 205 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00252 | DAP | Transfer from AT2G01060 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003054945.1 | 0.0 | g2-like myb family transcription factor | ||||
TrEMBL | C1MHF4 | 0.0 | C1MHF4_MICPC; G2-like myb family transcription factor | ||||
STRING | XP_003054945.1 | 0.0 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP111 | 16 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 4e-22 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | 61323 |
Entrez Gene | 9680330 |
Publications ? help Back to Top | |||
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