PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 60987
Common NameMICPUCDRAFT_60987
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB
Protein Properties Length: 569aa    MW: 59081.9 Da    PI: 11.0292
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
60987genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.9e-09334386348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 
                      +WT+ E e lv++v+ +G g+W+ I +          ++R++ ++k++w+++l
            60987 334 PWTPPEVEALVEGVAHYGRGQWADIKSLEAngvaaalETRSAVDLKDKWRNLL 386
                      8*******************999998777778888888*************96 PP
2Myb_DNA-binding223.8e-07460509248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 
                       +WT  E   lvd+v++  g +W+ I +  g    ++Rt+ ++k++w+++l
            60987 460 SPWTLVESRALVDGVERCNGCRWTVIKKL-GlselERRTAMDLKDKWRNLL 509
                      58*********************998665.559999*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.623327390IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.5E-13329387IPR009057Homeodomain-like
SuperFamilySSF466891.44E-13330388IPR009057Homeodomain-like
SMARTSM007179.6E-8331388IPR001005SANT/Myb domain
CDDcd116601.54E-17333387No hitNo description
PfamPF002491.4E-7334386IPR001005SANT/Myb domain
PROSITE profilePS512948.877454513IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.3E-9455510IPR009057Homeodomain-like
SMARTSM007170.0044458511IPR001005SANT/Myb domain
CDDcd116604.98E-15461509No hitNo description
SuperFamilySSF466899.4E-14461536IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MDANSMRKPT TAATLTKWET ANAAPVGGPT PDNSDRDGRG GGAGGGHSSD EDQRRADVAQ  60
SPRKEAPAPA VHVPPPAAAA IAAAPRPAAA AAPISPTSPA TLPWMHERRA TGRRSARGGR  120
VLNDAFIRRF RVAEAATRSE ARRINASTHN PIVAAPPGQP TALHLHAPRA SVAPLHHLLC  180
AVAPPAFGAA AAAREEDDPG RDRASTPRSA AARPVCAAEL LVGSPAAGMA AADTLLQMLM  240
MGAGVVEAGE DGMEKKANVA AAANIAAAAA AAAAAAAAAF DPVALPPPAW RAGTVEDGPK  300
IVPDTAMFVA ASAAAQKRRL LPSRGGGRQK VHRPWTPPEV EALVEGVAHY GRGQWADIKS  360
LEANGVAAAL ETRSAVDLKD KWRNLLRIAT LPVSYKRREA TEVPQATLAR VRELAAAKNV  420
PRAARGRDGE DGSSSPGDGS SSGGMKPSQP KGVRRSKHHS PWTLVESRAL VDGVERCNGC  480
RWTVIKKLGL SELERRTAMD LKDKWRNLLQ LASLPSQSRR KAETPPALLQ RVLRLEASYG  540
VARRKGRKSG GDGASSENGV EGGVISSA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003061340.10.0predicted protein
TrEMBLC1N0650.0C1N065_MICPC; Predicted protein
STRINGXP_003061340.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1276916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-15TRF-like 6
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]