PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

60902

Common Name

MICPUCDRAFT_60902

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

AP2

Protein Properties

Length: 1005aa MW: 106410 Da PI: 6.9668

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
60902	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.3	2.1e-14	484	532	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GV+ +k++grW+A+I+d ++ +lg+f tae+Aa+a+++ + k++g 60902 484 NFRGVTCYKRTGRWEAHIWD------AgRQRHLGSFATAEGAARAYDKSAIKFRG 532 69****************......34********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR01217	6.6E-9	213	225	No hit	No description
PRINTS	PR01217	6.6E-9	246	267	No hit	No description
PRINTS	PR01217	6.6E-9	295	312	No hit	No description
PRINTS	PR01217	6.6E-9	313	338	No hit	No description
CDD	cd00018	4.78E-15	483	541	No hit	No description
SuperFamily	SSF54171	3.4E-14	483	541	IPR016177	DNA-binding domain
PROSITE profile	PS51032	16.924	484	540	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-23	484	546	IPR001471	AP2/ERF domain
Pfam	PF00847	6.3E-6	484	532	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.5E-15	484	541	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005730	Cellular Component	nucleolus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1005 aa Download sequence Send to blast
MGEKLKGPAP DPRTSKARVT SKDDAGTLVR ARPRPPALAS AMIDLEARET LPRPRRDRTG 60 ARALAFDDVD ADAATPRASD DVARAPALPR PGAPASSSLW RENAARVARA GDAPRARPPT 120 SRDALAADRD VLRDDARCGG GGGGRAPRRD DRRAREGAEL LQLLASGGGE KKRSRSRSRS 180 RSRSPPAPPI RTRGDAREEA VTYRCVKPTG AGERKRARSP TPTPPRCPSP VAFEEEAEVE 240 NAAKEPRKRP SAPPPPPPAS SMPPKDPAKM SKRERSKMSK RARFELRERL AAEARAAAET 300 AAHAPEEPPP PPPTTTTTTT TPTPTTTTDA PPPARKKRRP PTKIEFDPEE DLEMGNTGLV 360 GLKFLRDGGA SLLKHLAPPG DDAAAVAAAV AAALARDDVG DAKSMTPAEW RALARGPRGE 420 HVDVDTTALG RRREKTRGDR QTNGGGHGEG GGGFDADGRA RERASRPSSK FKGSRRGPRS 480 DFSNFRGVTC YKRTGRWEAH IWDAGRQRHL GSFATAEGAA RAYDKSAIKF RGWSAELNFP 540 AEEYARDAAF REMLRGMNKG EFIVALRVEG KISGERLKKK MKMKMKEKAA DADAAAADDA 600 DDDDRGEKED AADAADAAAD DDADDDADER AFTDHDDAAE EEEERDDASD ADDADPPTPC 660 TRAALRLAKS AAAAREHVVR ARMRRFDRLA TRLATADSGS VDAGHAAPKH VLAFDDDDDD 720 DPWTVRPRRP LRDDDDDDDD EDEDEEAAEG GPEGAAAAAA ETRERALLAL ENAHATAVRM 780 IAAAFAQNAI ARAMSANAIR LIQSAAVDGV RVGAVTAKEL EESAVAAARA AGAAIAGSGR 840 CPPVGTVGTF GTFGTPAPTP TPTPTATRLG VGRTFPLPRH LAESRVVAAA ARRRDDDEDY 900 DPAPSPVSPG TALPAAEALA ALATGNVEGP GGGKRRGDAT NPDPSPSTSP FVSPERSAPQ 960 RWASGTGLLA RAPPPSCSTA WTAFDVDVVE TSADLEKTFR AAGR*

Sequence ? help Back to Top

Protein Sequence Length: 1005 aa Download sequence Send to blast

MGEKLKGPAP DPRTSKARVT SKDDAGTLVR ARPRPPALAS AMIDLEARET LPRPRRDRTG  60
ARALAFDDVD ADAATPRASD DVARAPALPR PGAPASSSLW RENAARVARA GDAPRARPPT  120
SRDALAADRD VLRDDARCGG GGGGRAPRRD DRRAREGAEL LQLLASGGGE KKRSRSRSRS  180
RSRSPPAPPI RTRGDAREEA VTYRCVKPTG AGERKRARSP TPTPPRCPSP VAFEEEAEVE  240
NAAKEPRKRP SAPPPPPPAS SMPPKDPAKM SKRERSKMSK RARFELRERL AAEARAAAET  300
AAHAPEEPPP PPPTTTTTTT TPTPTTTTDA PPPARKKRRP PTKIEFDPEE DLEMGNTGLV  360
GLKFLRDGGA SLLKHLAPPG DDAAAVAAAV AAALARDDVG DAKSMTPAEW RALARGPRGE  420
HVDVDTTALG RRREKTRGDR QTNGGGHGEG GGGFDADGRA RERASRPSSK FKGSRRGPRS  480
DFSNFRGVTC YKRTGRWEAH IWDAGRQRHL GSFATAEGAA RAYDKSAIKF RGWSAELNFP  540
AEEYARDAAF REMLRGMNKG EFIVALRVEG KISGERLKKK MKMKMKEKAA DADAAAADDA  600
DDDDRGEKED AADAADAAAD DDADDDADER AFTDHDDAAE EEEERDDASD ADDADPPTPC  660
TRAALRLAKS AAAAREHVVR ARMRRFDRLA TRLATADSGS VDAGHAAPKH VLAFDDDDDD  720
DPWTVRPRRP LRDDDDDDDD EDEDEEAAEG GPEGAAAAAA ETRERALLAL ENAHATAVRM  780
IAAAFAQNAI ARAMSANAIR LIQSAAVDGV RVGAVTAKEL EESAVAAARA AGAAIAGSGR  840
CPPVGTVGTF GTFGTPAPTP TPTPTATRLG VGRTFPLPRH LAESRVVAAA ARRRDDDEDY  900
DPAPSPVSPG TALPAAEALA ALATGNVEGP GGGKRRGDAT NPDPSPSTSP FVSPERSAPQ  960
RWASGTGLLA RAPPPSCSTA WTAFDVDVVE TSADLEKTFR AAGR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	57	RPRRDR
2	171	176	KRSRSR
3	172	182	RSRSRSRSRSR
4	174	182	RSRSRSRSR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003061034.1	0.0	predicted protein
TrEMBL	C1MZY5	0.0	C1MZY5_MICPC; Predicted protein
STRING	XP_003061034.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5751	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G39250.1	5e-24	AP2 family protein

Link Out ? help Back to Top
Phytozome	60902
Entrez Gene	9686740

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]