PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 60637
Common NameMICPUCDRAFT_60637
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family WOX
Protein Properties Length: 559aa    MW: 62360 Da    PI: 4.9811
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
60637genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-09503556452
               -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHH CS
  Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrR 52 
                + +t+ qle+L+elF+   ++ps+++++++A+++    + t+++V  WF  +R
     60637 503 EWEPTAAQLERLNELFKAgVQNPSERAIARIANQIstfgKCTDDNVERWFAVKR 556
               799**************99*******************************8666 PP
2Wus_type_Homeobox47.93.3e-16501555357
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNr 57 
                        ++ W Pt+ Q++ L+el+k+G+++P+++ i ri+++++++Gk +d NV  WF  +
              60637 501 SEEWEPTAAQLERLNELFKAGVQNPSERAIARIANQISTFGKCTDDNVERWFAVK 555
                        578*************************************************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000462.8E-7503556IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MSYKGSDSCL AAELAVRLNE REFGAPLLAG AAVMTSAEEA WAEFKGAFAA LEREGKAVPY  60
FIAERLGLDT ENAHCLETVR GCVKQLDEEK GFGKIYKKVY KIEARVWAKF KTAIAELEPQ  120
GKALPYFIVQ SMGLDTGNHE NFDLVKKFLR YYKKELAERE REANVNDAAE PDPDLAPPMN  180
VEESPTNVEV GPRPVAVARA NDDDDDDDDG AGDAEIVTAA MIQRAQARLD TMGAVGWKAI  240
ARVVAVSPTG DVVARDVADV ERILREERVR VGEPRVATPP SSAPAAEDVI AKTIEARVTE  300
MQTEMEAKLT AAVDARVKEK VKEFEANLKS ELDAEKEKAK EKAKEPSREP SPPPLRERRE  360
QPSKKRSAEK APTRAGDGKR RREEENDAPR EVDRPKRVVS RATPPARKYA PRKNAARTDY  420
FPVGTKIRKM FDGEWFKGVV REVDDKDQKL PYFVKYEDGD KEDLSHEELS RLVVSPRGRP  480
RSKLIHYDDD GEDETTSDED SEEWEPTAAQ LERLNELFKA GVQNPSERAI ARIANQISTF  540
GKCTDDNVER WFAVKRGA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1363381KKRSAEKAPTRAGDGKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003060912.10.0predicted protein
TrEMBLC1MZ820.0C1MZ82_MICPC; Predicted protein
STRINGXP_003060912.10.0(Micromonas pusilla)
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]