PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

60572

Common Name

MICPUCDRAFT_60572

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

MYB_related

Protein Properties

Length: 412aa MW: 45417.1 Da PI: 6.5366

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
60572	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.5	4.2e-10	355	404	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqk 46 ++ W+ eE + l ++vk++G +Wk+I + Rt ++k++w++ 60572 355 KQYWSDEEVKELERLVKKYGESNWKKIQTEGAgvfdPARTNVHLKDKWRT 404 688**********************998777*************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.511	350	410	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-12	352	407	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.86E-12	352	406	IPR009057	Homeodomain-like
SMART	SM00717	3.8E-6	354	408	IPR001005	SANT/Myb domain
Pfam	PF00249	8.5E-8	355	405	IPR001005	SANT/Myb domain
CDD	cd11660	7.46E-15	356	407	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 412 aa Download sequence Send to blast
MCAPDSQFNS DEEREKVNER RSLKLQIPPP PLRAQIRLLL DSLNYSTRNF EHIDKKCAMM 60 VFESLVTVGD KTSTLDAAGG VLPVPSPLLV ARCYSETCIT HLRGPKPNVK AFKEAVHAYL 120 VEDLKDTSPW LDAETLVNCR DGLARVCEWA TPARAGEVLN RWHAEKELLQ QLAQYASSVI 180 KAMGPSFLEL VAIDIARGAY NPMVEEGLLL PKKERDGDAR AAAARRDATT SSDEDEDEDE 240 DAPPAAKAAK ATTRTTRGGG EDAAAWKKLG KRATANETQE EIAPADDDDD DEPSPAAIRA 300 KKMKISSTRK PGATTVEWDG DSQFTTPGEK GTPTLPSFAV EKKKHATTAT GRKKKQYWSD 360 EEVKELERLV KKYGESNWKK IQTEGAGVFD PARTNVHLKD KWRTMQKGNR G*

Sequence ? help Back to Top

Protein Sequence Length: 412 aa Download sequence Send to blast

MCAPDSQFNS DEEREKVNER RSLKLQIPPP PLRAQIRLLL DSLNYSTRNF EHIDKKCAMM  60
VFESLVTVGD KTSTLDAAGG VLPVPSPLLV ARCYSETCIT HLRGPKPNVK AFKEAVHAYL  120
VEDLKDTSPW LDAETLVNCR DGLARVCEWA TPARAGEVLN RWHAEKELLQ QLAQYASSVI  180
KAMGPSFLEL VAIDIARGAY NPMVEEGLLL PKKERDGDAR AAAARRDATT SSDEDEDEDE  240
DAPPAAKAAK ATTRTTRGGG EDAAAWKKLG KRATANETQE EIAPADDDDD DEPSPAAIRA  300
KKMKISSTRK PGATTVEWDG DSQFTTPGEK GTPTLPSFAV EKKKHATTAT GRKKKQYWSD  360
EEVKELERLV KKYGESNWKK IQTEGAGVFD PARTNVHLKD KWRTMQKGNR G*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003061140.1	0.0	predicted protein
TrEMBL	C1MZ21	0.0	C1MZ21_MICPC; Predicted protein
STRING	XP_003061140.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP6506	6	6

Link Out ? help Back to Top
Phytozome	60572
Entrez Gene	9686320

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]