PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

60407

Common Name

MICPUCDRAFT_60407

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

CPP

Protein Properties

Length: 626aa MW: 62799.7 Da PI: 8.7582

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
60407	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.2	1.9e-14	267	304	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YCeCfaag++C++ C+C++C+N+ + 60407 267 SKKCNCKKSKCLKLYCECFAAGAFCQD-CSCQNCQNTPD 304 69***********************.******976 PP
2	TCR	52.6	9.3e-17	336	374	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k+kkgC+Ckks ClkkYCeCf+ag+ C+e CkCe+CkN 60407 336 KHKKGCHCKKSACLKKYCECFQAGVLCQEYCKCEGCKNA 374 689***********************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	3.4E-14	265	305	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	31.93	266	376	IPR005172	CRC domain
Pfam	PF03638	3.2E-12	268	302	IPR005172	CRC domain
SMART	SM01114	4.9E-15	336	377	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	9.7E-13	338	374	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 626 aa Download sequence Send to blast
MSADAAVIAA VSALAQSPLR PGVLDDVTDV ASVAQLRKQL ENEFNVNLTE PESNVVRSIS 60 RLEKELLQLD DELDLDGGYG RGRVDGGANL RGAAARGRRD AGAGAPAGVG AVAAEASEAM 120 EGAKRSSTTG ASMEWPHGLS KTVKKDGEDS PRMNSATMRG QRARLVALGA AGKKGGKKSA 180 DGALLDDAGR PLSAPASGRG GGSAQKGGNG NANRRLSGAN AMSTPAVKDS RAPRFSADGS 240 GSVLCTPVNL FGGGGKGGGD TPESCASKKC NCKKSKCLKL YCECFAAGAF CQDCSCQNCQ 300 NTPDNAALVQ MTRTQIELRN PQAFANKIVA TDGEEKHKKG CHCKKSACLK KYCECFQAGV 360 LCQEYCKCEG CKNAGPDGPF GATPPAATAA AKSSKSKASN AKSAAAAAAA TTTTTTAAMM 420 GGAMPSPGAL INDDEADLII EELMMKSPGR GGAAALAVAE ELGLDLLQSP PKKAGSGAGA 480 GAGAGAASSG STPPSAAPDA VHATPMKRAE ISPLTPGSGT IMRAGPGRVT LNGGGAVFER 540 TTRSKVPPPR FGDDPATRKA AVEAATAAAA AAAAASSEKT PNTITRKATR SRAFGSLASG 600 HDSLQGGMMT TLGSPVPLST PEGFE*

Sequence ? help Back to Top

Protein Sequence Length: 626 aa Download sequence Send to blast

MSADAAVIAA VSALAQSPLR PGVLDDVTDV ASVAQLRKQL ENEFNVNLTE PESNVVRSIS  60
RLEKELLQLD DELDLDGGYG RGRVDGGANL RGAAARGRRD AGAGAPAGVG AVAAEASEAM  120
EGAKRSSTTG ASMEWPHGLS KTVKKDGEDS PRMNSATMRG QRARLVALGA AGKKGGKKSA  180
DGALLDDAGR PLSAPASGRG GGSAQKGGNG NANRRLSGAN AMSTPAVKDS RAPRFSADGS  240
GSVLCTPVNL FGGGGKGGGD TPESCASKKC NCKKSKCLKL YCECFAAGAF CQDCSCQNCQ  300
NTPDNAALVQ MTRTQIELRN PQAFANKIVA TDGEEKHKKG CHCKKSACLK KYCECFQAGV  360
LCQEYCKCEG CKNAGPDGPF GATPPAATAA AKSSKSKASN AKSAAAAAAA TTTTTTAAMM  420
GGAMPSPGAL INDDEADLII EELMMKSPGR GGAAALAVAE ELGLDLLQSP PKKAGSGAGA  480
GAGAGAASSG STPPSAAPDA VHATPMKRAE ISPLTPGSGT IMRAGPGRVT LNGGGAVFER  540
TTRSKVPPPR FGDDPATRKA AVEAATAAAA AAAAASSEKT PNTITRKATR SRAFGSLASG  600
HDSLQGGMMT TLGSPVPLST PEGFE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-22	268	373	12	120	Protein lin-54 homolog
5fd3_B	2e-22	268	373	12	120	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003060811.1	0.0	tso1-like transcription factor
TrEMBL	C1MY55	0.0	C1MY55_MICPC; Tso1-like transcription factor
STRING	XP_003060811.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP323	15	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	8e-19	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	60407
Entrez Gene	9685948

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]