PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 60407 | ||||||||
Common Name | MICPUCDRAFT_60407 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | CPP | ||||||||
Protein Properties | Length: 626aa MW: 62799.7 Da PI: 8.7582 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 45.2 | 1.9e-14 | 267 | 304 | 3 | 41 |
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +k+CnCkkskClk+YCeCfaag++C++ C+C++C+N+ + 60407 267 SKKCNCKKSKCLKLYCECFAAGAFCQD-CSCQNCQNTPD 304 69*************************.********976 PP | |||||||
2 | TCR | 52.6 | 9.3e-17 | 336 | 374 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k+kkgC+Ckks ClkkYCeCf+ag+ C+e CkCe+CkN 60407 336 KHKKGCHCKKSACLKKYCECFQAGVLCQEYCKCEGCKNA 374 689***********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.4E-14 | 265 | 305 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 31.93 | 266 | 376 | IPR005172 | CRC domain |
Pfam | PF03638 | 3.2E-12 | 268 | 302 | IPR005172 | CRC domain |
SMART | SM01114 | 4.9E-15 | 336 | 377 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 9.7E-13 | 338 | 374 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 626 aa Download sequence Send to blast |
MSADAAVIAA VSALAQSPLR PGVLDDVTDV ASVAQLRKQL ENEFNVNLTE PESNVVRSIS 60 RLEKELLQLD DELDLDGGYG RGRVDGGANL RGAAARGRRD AGAGAPAGVG AVAAEASEAM 120 EGAKRSSTTG ASMEWPHGLS KTVKKDGEDS PRMNSATMRG QRARLVALGA AGKKGGKKSA 180 DGALLDDAGR PLSAPASGRG GGSAQKGGNG NANRRLSGAN AMSTPAVKDS RAPRFSADGS 240 GSVLCTPVNL FGGGGKGGGD TPESCASKKC NCKKSKCLKL YCECFAAGAF CQDCSCQNCQ 300 NTPDNAALVQ MTRTQIELRN PQAFANKIVA TDGEEKHKKG CHCKKSACLK KYCECFQAGV 360 LCQEYCKCEG CKNAGPDGPF GATPPAATAA AKSSKSKASN AKSAAAAAAA TTTTTTAAMM 420 GGAMPSPGAL INDDEADLII EELMMKSPGR GGAAALAVAE ELGLDLLQSP PKKAGSGAGA 480 GAGAGAASSG STPPSAAPDA VHATPMKRAE ISPLTPGSGT IMRAGPGRVT LNGGGAVFER 540 TTRSKVPPPR FGDDPATRKA AVEAATAAAA AAAAASSEKT PNTITRKATR SRAFGSLASG 600 HDSLQGGMMT TLGSPVPLST PEGFE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 2e-22 | 268 | 373 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 2e-22 | 268 | 373 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003060811.1 | 0.0 | tso1-like transcription factor | ||||
TrEMBL | C1MY55 | 0.0 | C1MY55_MICPC; Tso1-like transcription factor | ||||
STRING | XP_003060811.1 | 0.0 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP323 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22760.1 | 8e-19 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | 60407 |
Entrez Gene | 9685948 |
Publications ? help Back to Top | |||
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