PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

59798

Common Name

MICPUCDRAFT_59798

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

MYB_related

Protein Properties

Length: 554aa MW: 60871.4 Da PI: 8.7226

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
59798	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.9	4.1e-07	94	143	1	47
TSSS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47 +g+W++eE ++ v a +++ ++ + Ia+++g +R ++q++ +++++ 59798 94 KGSWSEEEKQRAVAAANEFKSKskygAYTFIAEHVG-TRNAEQVRAWLNTH 143 799*******************************.******999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.859	89	148	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-6	90	146	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-5	93	146	IPR001005	SANT/Myb domain
Pfam	PF00249	4.3E-6	94	143	IPR001005	SANT/Myb domain
CDD	cd00167	0.0029	96	143	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 554 aa Download sequence Send to blast
MTPKISFEEL LVRNELDQKP VVSVEGDQLY LIEGRGEYAG GTRLETPEKI DAVRERCDDD 60 NVNAVTTSAV TTPPSATTSA ETNADAPVQK AMNKGSWSEE EKQRAVAAAN EFKSKSKYGA 120 YTFIAEHVGT RNAEQVRAWL NTHGKKLQDI PQYLKQTRAY EKLNIDVDSS DERRKVHAGR 180 QNLKRRAVGA DGKTGNERRA EARRTVVGAD GKTENERANE ARRAVGADGK TGNERRVEAR 240 RTVVGADGKT ENERGNEARR AVGGAVGADG KTGYERHNEA RRAKHAEEVT ITTKEGETLD 300 KVTIARGGEI EPKRSDADIS FAAEAWVKAA LAGMEEMSKV GKVASVGIQA TALHRASDEG 360 CNLLHRENVR ELLAERGLLP SGVHLATFDF NFRARGETCL RLEKAVQQRF IVMRDAGEVH 420 LLFNYAGRGT LRCNITGINQ TVTVSFACDK RCGSITKEDI ERVLASFDAV LGSEENAHLG 480 LRAKVAVNAE HDGAEGVVAM LETILRDKNV PMALVIEFFY IHYNKDLRYK TVGLRQQMAL 540 RVIEKRGWGT VKG*

Sequence ? help Back to Top

Protein Sequence Length: 554 aa Download sequence Send to blast

MTPKISFEEL LVRNELDQKP VVSVEGDQLY LIEGRGEYAG GTRLETPEKI DAVRERCDDD  60
NVNAVTTSAV TTPPSATTSA ETNADAPVQK AMNKGSWSEE EKQRAVAAAN EFKSKSKYGA  120
YTFIAEHVGT RNAEQVRAWL NTHGKKLQDI PQYLKQTRAY EKLNIDVDSS DERRKVHAGR  180
QNLKRRAVGA DGKTGNERRA EARRTVVGAD GKTENERANE ARRAVGADGK TGNERRVEAR  240
RTVVGADGKT ENERGNEARR AVGGAVGADG KTGYERHNEA RRAKHAEEVT ITTKEGETLD  300
KVTIARGGEI EPKRSDADIS FAAEAWVKAA LAGMEEMSKV GKVASVGIQA TALHRASDEG  360
CNLLHRENVR ELLAERGLLP SGVHLATFDF NFRARGETCL RLEKAVQQRF IVMRDAGEVH  420
LLFNYAGRGT LRCNITGINQ TVTVSFACDK RCGSITKEDI ERVLASFDAV LGSEENAHLG  480
LRAKVAVNAE HDGAEGVVAM LETILRDKNV PMALVIEFFY IHYNKDLRYK TVGLRQQMAL  540
RVIEKRGWGT VKG*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003060232.1	0.0	myb DNA binding domain-containing protein
TrEMBL	C1MWK0	0.0	C1MWK0_MICPC; Myb DNA binding domain-containing protein
STRING	XP_003060232.1	0.0	(Micromonas pusilla)

Link Out ? help Back to Top
Phytozome	59798
Entrez Gene	9685670

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]