PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

59356

Common Name

MICPUCDRAFT_59356

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

HB-PHD

Protein Properties

Length: 535aa MW: 58162.7 Da PI: 5.1295

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
59356	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37	5.9e-12	473	525	6	57
S--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +f +e Le+ F + + +p a++ + +++gLt qVk+WF NrR kk 59356 473 RFGDETRASLERTFSSgKTNPGADDCDAIGERVGLTSHQVKIWFMNRRRASKK 525 577888999****99*****************************98886 PP
2	PHD	38.6	2.5e-13	178	232	1	50
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 +C++Cg+ s+++++++lCdg C++ fH+ C+ ++ ++e++peg wlC C+ 59356 178 FCCACGDgeSTDDNDILLCDGfCDRGFHQRCCVPPVRTEDIPEGdeGWLCALCDA 232 699**98889****88*******************9*****86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	5.35E-14	168	237	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	1.7E-13	175	232	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.665	176	233	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	5.7E-7	178	231	IPR001965	Zinc finger, PHD-type
Pfam	PF00628	9.2E-11	178	232	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	1.06E-27	178	230	No hit	No description
PROSITE pattern	PS01359	0	179	230	IPR019786	Zinc finger, PHD-type, conserved site
Gene3D	G3DSA:1.10.10.60	3.9E-11	448	525	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.27E-10	462	527	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.281	465	526	IPR001356	Homeobox domain
SMART	SM00389	2.3E-9	466	530	IPR001356	Homeobox domain
CDD	cd00086	2.19E-8	470	526	No hit	No description
Pfam	PF00046	3.8E-9	473	525	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MPLGRNTPPR IASRGSGQGF GKRKRVAKVA FTPEPAPRKR AAADAKKKAA SSSNDVASDA 60 NTTRGGGGGR RRARKNGKRA NVDDVSEYKR TRGKIHSQLS AIRQLNAMID AYDMDGWRGA 120 SREKLRPAEE IRKAKIKIFN AKLRVRELFK HIDLAMDGAR DLHAITDEDG ELDAEDVFCC 180 ACGDGESTDD NDILLCDGFC DRGFHQRCCV PPVRTEDIPE GDEGWLCALC DARVDCFYTL 240 NADFELELDA GKATFADVFP EEAEADVKKE GPGQENETLA AKKGDGGVVS GGIMEQEWPS 300 DEEDDEDFGA DAASDDGEDD EDEPLSGSGR SESDDSDDDS DDDSDDDSGG DSARRRLERA 360 LRDEPEVVVG KRRRAKVDYR KLNDEMFGDG EAFEGEFDDE RRGGWGPASP KSGMVTTGEG 420 KRPKKAPRAK TPSSASKKRR RSSTSAAPTS PRSPKSRRLS NTPAGKQSTK TSRFGDETRA 480 SLERTFSSGK TNPGADDCDA IGERVGLTSH QVKIWFMNRR RASKKRASTG GGDE*

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MPLGRNTPPR IASRGSGQGF GKRKRVAKVA FTPEPAPRKR AAADAKKKAA SSSNDVASDA  60
NTTRGGGGGR RRARKNGKRA NVDDVSEYKR TRGKIHSQLS AIRQLNAMID AYDMDGWRGA  120
SREKLRPAEE IRKAKIKIFN AKLRVRELFK HIDLAMDGAR DLHAITDEDG ELDAEDVFCC  180
ACGDGESTDD NDILLCDGFC DRGFHQRCCV PPVRTEDIPE GDEGWLCALC DARVDCFYTL  240
NADFELELDA GKATFADVFP EEAEADVKKE GPGQENETLA AKKGDGGVVS GGIMEQEWPS  300
DEEDDEDFGA DAASDDGEDD EDEPLSGSGR SESDDSDDDS DDDSDDDSGG DSARRRLERA  360
LRDEPEVVVG KRRRAKVDYR KLNDEMFGDG EAFEGEFDDE RRGGWGPASP KSGMVTTGEG  420
KRPKKAPRAK TPSSASKKRR RSSTSAAPTS PRSPKSRRLS NTPAGKQSTK TSRFGDETRA  480
SLERTFSSGK TNPGADDCDA IGERVGLTSH QVKIWFMNRR RASKKRASTG GGDE*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	353	373	RRRLERALRDEPEVVVGKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003059740.1	0.0	predicted protein
TrEMBL	C1MVF1	0.0	C1MVF1_MICPC; Predicted protein
STRING	XP_003059740.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3402	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-47	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Link Out ? help Back to Top
Phytozome	59356
Entrez Gene	9685466

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]