PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 58408
Common NameMICPUCDRAFT_58408
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family E2F/DP
Protein Properties Length: 811aa    MW: 80828.6 Da    PI: 5.9358
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
58408genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP74.11.4e-23156221171
  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
              rk+ksL+ll+++fl+l+   +e+ ++l+e+a++L    v  +rRRiYDi+NVLe+++++ +k+kn+++w+g
    58408 156 RKDKSLGLLCENFLHLYGAGQEELISLDEAATKL---GV--ERRRIYDIVNVLESVEVVVRKAKNKYTWHG 221
              79********************************...**..****************************98 PP

2E2F_TDP69.73.6e-22360440171
  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 
              r+eksL+ll+qkf++l+  s++++v+l+ +a++L+       + k+k+RR+YDi+N+L++l+liek     ++k+++rw g
    58408 360 RREKSLGLLSQKFVQLFLVSRARVVSLEAAARTLLGAcadqaKLKTKVRRLYDIANILSSLRLIEKthlvdSRKPAFRWLG 440
              689*******************************999999**99*************************999*******87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-26153222IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.39E-15155220IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.4E-30156221IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023199.3E-21157221IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.2E-23357442IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.8E-30360440IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.63E-11362441IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.7E-19362440IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 811 aa     Download sequence    Send to blast
MAPPPPADGA NAAGQPDGNA ATAPSPGAFS AAGAPIPGAP LANAAGGVAF PPNFSGASAV  60
APGAAPGAAN DPAALAAAMA HFMQNFMQNG AMPTPFANPA MAAMAQAQAG VAEHLQRSGS  120
AAALRSDPRS GDGGPPSRGP TPGALGSEIG SAAYNRKDKS LGLLCENFLH LYGAGQEELI  180
SLDEAATKLG VERRRIYDIV NVLESVEVVV RKAKNKYTWH GIARMPNALD RLYREGVKEF  240
GEDLALDGGD ASGPSSPKRG GGGGSDARDA VEEEKEEKEK EAPGRDAAGP SGAEEKDAKS  300
GSSGEGEHDP SDGGGGDAKK DDKDDGEDSA KSSKDDETAA ATASHKPGGG KEKEGGGDCR  360
REKSLGLLSQ KFVQLFLVSR ARVVSLEAAA RTLLGACADQ AKLKTKVRRL YDIANILSSL  420
RLIEKTHLVD SRKPAFRWLG VEKDLAVAAA AAEAQAHNKG GGLPGAPIPG LPGGAPAFNP  480
QWFMPNSMGR APTPAPFDVQ GPARPGSSLG KSKRDSGGPS SLSDKSSPSR ECAVLDALGG  540
DIKRPRSALG NAASSSGGGG FAAPPHAPTP RAATPNLDLL SALASGEAGD PSPTRPIPTV  600
APAMNAVAPW LSGLGGMAGA NAAAAPAAAN AATSVDFAAM ARAMAAAGIY SPAPTPPPQM  660
DAAPAAFPGM APGSMEMMMA MAQMQQMQQM TQLSQLQRAM MTAAGAGVGV GAGAGAGAPT  720
TASAPVPIPG AASNAAVKSE AVKTEDAAAA ALGALGGGMF GQPSAAATPA APAVDYVPSQ  780
FTEPMAQYMD MWKQWYAAAG AGVPPGGGAK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A1e-181554323228Transcription factor E2F8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348356GGKEKEGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003058647.10.0hypothetical protein MICPUCDRAFT_58408
TrEMBLC1MSA20.0C1MSA2_MICPC; Uncharacterized protein
STRINGXP_003058647.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41861012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.17e-29DP-E2F-like 1
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]