PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 58408 | ||||||||
Common Name | MICPUCDRAFT_58408 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | E2F/DP | ||||||||
Protein Properties | Length: 811aa MW: 80828.6 Da PI: 5.9358 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 74.1 | 1.4e-23 | 156 | 221 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rk+ksL+ll+++fl+l+ +e+ ++l+e+a++L v +rRRiYDi+NVLe+++++ +k+kn+++w+g 58408 156 RKDKSLGLLCENFLHLYGAGQEELISLDEAATKL---GV--ERRRIYDIVNVLESVEVVVRKAKNKYTWHG 221 79********************************...**..****************************98 PP | |||||||
2 | E2F_TDP | 69.7 | 3.6e-22 | 360 | 440 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 r+eksL+ll+qkf++l+ s++++v+l+ +a++L+ + k+k+RR+YDi+N+L++l+liek ++k+++rw g 58408 360 RREKSLGLLSQKFVQLFLVSRARVVSLEAAARTLLGAcadqaKLKTKVRRLYDIANILSSLRLIEKthlvdSRKPAFRWLG 440 689*******************************999999**99*************************999*******87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.0E-26 | 153 | 222 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.39E-15 | 155 | 220 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 5.4E-30 | 156 | 221 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 9.3E-21 | 157 | 221 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.2E-23 | 357 | 442 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 4.8E-30 | 360 | 440 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.63E-11 | 362 | 441 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 1.7E-19 | 362 | 440 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032876 | Biological Process | negative regulation of DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 811 aa Download sequence Send to blast |
MAPPPPADGA NAAGQPDGNA ATAPSPGAFS AAGAPIPGAP LANAAGGVAF PPNFSGASAV 60 APGAAPGAAN DPAALAAAMA HFMQNFMQNG AMPTPFANPA MAAMAQAQAG VAEHLQRSGS 120 AAALRSDPRS GDGGPPSRGP TPGALGSEIG SAAYNRKDKS LGLLCENFLH LYGAGQEELI 180 SLDEAATKLG VERRRIYDIV NVLESVEVVV RKAKNKYTWH GIARMPNALD RLYREGVKEF 240 GEDLALDGGD ASGPSSPKRG GGGGSDARDA VEEEKEEKEK EAPGRDAAGP SGAEEKDAKS 300 GSSGEGEHDP SDGGGGDAKK DDKDDGEDSA KSSKDDETAA ATASHKPGGG KEKEGGGDCR 360 REKSLGLLSQ KFVQLFLVSR ARVVSLEAAA RTLLGACADQ AKLKTKVRRL YDIANILSSL 420 RLIEKTHLVD SRKPAFRWLG VEKDLAVAAA AAEAQAHNKG GGLPGAPIPG LPGGAPAFNP 480 QWFMPNSMGR APTPAPFDVQ GPARPGSSLG KSKRDSGGPS SLSDKSSPSR ECAVLDALGG 540 DIKRPRSALG NAASSSGGGG FAAPPHAPTP RAATPNLDLL SALASGEAGD PSPTRPIPTV 600 APAMNAVAPW LSGLGGMAGA NAAAAPAAAN AATSVDFAAM ARAMAAAGIY SPAPTPPPQM 660 DAAPAAFPGM APGSMEMMMA MAQMQQMQQM TQLSQLQRAM MTAAGAGVGV GAGAGAGAPT 720 TASAPVPIPG AASNAAVKSE AVKTEDAAAA ALGALGGGMF GQPSAAATPA APAVDYVPSQ 780 FTEPMAQYMD MWKQWYAAAG AGVPPGGGAK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 1e-18 | 155 | 432 | 3 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 348 | 356 | GGKEKEGGG |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00397 | DAP | Transfer from AT3G48160 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003058647.1 | 0.0 | hypothetical protein MICPUCDRAFT_58408 | ||||
TrEMBL | C1MSA2 | 0.0 | C1MSA2_MICPC; Uncharacterized protein | ||||
STRING | XP_003058647.1 | 0.0 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4186 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.1 | 7e-29 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
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Phytozome | 58408 |
Entrez Gene | 9684454 |
Publications ? help Back to Top | |||
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