PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 57221
Common NameMICPUCDRAFT_57221
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family E2F/DP
Protein Properties Length: 488aa    MW: 50744.1 Da    PI: 4.6159
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
57221genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP87.69.1e-28195277171
  E2F_TDP   1 rkeksLrlltqkflklleksee.givtlnevakeLvse...............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
              +++k+Lr++++k   ++ek+ee  ++t+neva+eLv+e               d+kn+rRR+YD+lNVL+a+++i+k ek+ei+wkg
    57221 195 KNGKGLRHFSMK---VCEKVEEkHKTTYNEVADELVAEfskpddpkfcadqayDEKNIRRRVYDALNVLMAMDIITK-EKKEITWKG 277
              579*********...******99******************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.9E-45191280IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.6E-33195277IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.8E-25197277IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.9E-21198278IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM011384.8E-43301426IPR014889Transcription factor DP, C-terminal
PfamPF087813.5E-32302406IPR014889Transcription factor DP, C-terminal
CDDcd144584.44E-36302401IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.71E-32302404No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MSNPNGPGGV LGADDALNAD LMESFRDTGM YNFASEFDIL PEPTGVMPGT DAGLDAEPGP  60
VPTGLDSLGV DDGLGVMNDD LAQRAGVKRE PIPIGSPFRG GANEGGLIGQ GAVAAAAEAV  120
EQSRRRLSDA TTAAGATADP SSPPASAIKK QARISQSEVT PTPPPPSSSK KRKQLASGGG  180
TGGSTGGMNT AEKEKNGKGL RHFSMKVCEK VEEKHKTTYN EVADELVAEF SKPDDPKFCA  240
DQAYDEKNIR RRVYDALNVL MAMDIITKEK KEITWKGLPQ IAGGVGGGGV GGGGGGGGDA  300
AEYEKLLAEK KRVQASIEKK NAHLQELVEQ YKSYQALLRR NETRATRGET PNGIQLPFIL  360
VQTAPTATVE IEISEDQQLV HFDFNDAPFQ IHDANYVLQQ MALNEDGLSR LDLHRAEEGA  420
EGGVGGGGGG GDAPAFAEID GADFAAAAAA AAEVETETAS PGEARRGTRG DDADDGGRGG  480
GRSTRKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-36194279690PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003058096.10.0dp-like protein
TrEMBLC1MQA90.0C1MQA9_MICPC; Dp-like protein
STRINGXP_003058096.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP15991417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-67Transcription factor DP
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]