PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 56781 | ||||||||
Common Name | MICPUCDRAFT_56781 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | MYB_related | ||||||||
Protein Properties | Length: 413aa MW: 42318.7 Da PI: 11.0339 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.6 | 3.9e-10 | 5 | 55 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46 + +W+ eE++ l+++vk++G+g W++I + + R+ ++k++w++ 56781 5 KTKWSVEEEDALKRGVKKYGPGKWRLIQKDDVlgktlNLRSNVDLKDKWRN 55 579************************987554588879**********99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.754 | 1 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-14 | 2 | 59 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-9 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.9E-8 | 5 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-14 | 5 | 56 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 3.14E-18 | 7 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000785 | Cellular Component | chromatin | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0070491 | Molecular Function | repressing transcription factor binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 413 aa Download sequence Send to blast |
MGAPKTKWSV EEEDALKRGV KKYGPGKWRL IQKDDVLGKT LNLRSNVDLK DKWRNMYPNN 60 GSSEYTVRAA TAPLPSSLRS SRDRRRVDAA AAAAAALASA ARPPAARSPP GLARPRASGG 120 ASLPLRDRRA DAAATSRATT ATRLIILGAV DSIPFDSFRV APPRSPLRPT PSSSSPPRRA 180 QDDDDKTSDG SRGATKSESG GRRGGKGRSS GGGGSRGGGG GGGGGSKKTS SASEKNSGGA 240 RSHHRKDKSE VKSEKGAGGG GSAGGDKSKR DRGGNDGNGG NAKKKQKNAG GAGGRASGGA 300 APASTATMTP AEAPYLFLVN GQYRTAEEVN KDAARAVRDA EKAAALAEEA AREAETYEKE 360 AWEAERLANA LVESAERQKQ RMEALERQKR AGAGAGGLKT PTANGGEGGV PA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00652 | PBM | Transfer from LOC_Os01g51154 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003057517.1 | 0.0 | single myb histone protein | ||||
TrEMBL | C1MN49 | 0.0 | C1MN49_MICPC; Single myb histone protein | ||||
STRING | XP_003057517.1 | 0.0 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3956 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49950.3 | 2e-19 | telomere repeat binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | 56781 |
Entrez Gene | 9682482 |
Publications ? help Back to Top | |||
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