PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 56149
Common NameMICPUCDRAFT_56149
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family CO-like
Protein Properties Length: 425aa    MW: 44884.4 Da    PI: 7.8454
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
56149genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box30.86.2e-10348241
  zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
              +++ C++++  ++++fC  ++  lC+ C +++H        H+++p
     56149  3 NKMPCDNCHAAPAEWFCAHDGANLCARCDVAIHTAnklamrHERIP 48
              6799*****************************6578888898876 PP
2CCT55.62e-19261304143
    CCT   1 ReaallRYkeKrktRkF.eKkirYesRKavAesRpRvKGrFvkq 43 
            R a+l+RY+ Kr  R    KkirYe+RK++A++RpR+KGrF+k 
  56149 261 RHAQLQRYRAKRLARHLgHKKIRYECRKTLADNRPRIKGRFAKV 304
            899************9956***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.0E-10249IPR000315B-box-type zinc finger
PROSITE profilePS5011910.95249IPR000315B-box-type zinc finger
PfamPF006438.9E-8348IPR000315B-box-type zinc finger
CDDcd000211.80E-7649No hitNo description
PfamPF062034.8E-17261304IPR010402CCT domain
PROSITE profilePS5101712.312261304IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MTNKMPCDNC HAAPAEWFCA HDGANLCARC DVAIHTANKL AMRHERIPME QKLANDALCQ  60
SINPTNDGFD TEMGVARNEQ ASTSSGAPTN ETSNDLDWLV SGPHGNMDDP LSNLLDMHQD  120
AHDSSNGDAS HFGLDDASLW GSHGGFGNGN HLSSAAFRNS DARRELSAQP VVGDSAGFVT  180
GNGAAMMGQG HADGMQRQQN DGKEISSTSG TSETTQAPTQ MMPPHAGGQV NFSHGGGAPG  240
GPGSPHYDQV LTRPFATSAL RHAQLQRYRA KRLARHLGHK KIRYECRKTL ADNRPRIKGR  300
FAKVHSDPNL AAAALAAVQS CPDLTALNVV GEDKESSEDS NSKKGGRNAK SRLSNGSGSN  360
ESSSPKLKNP AHKASSKKPN TRGSGASSPE QWDSTAGVSL RSGGKGMPYT QSEVSLVDLG  420
RRLC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003056761.10.0predicted protein
TrEMBLC1MP520.0C1MP52_MICPC; Predicted protein
STRINGXP_003056761.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP741055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.19e-18CONSTANS-like 2
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]