PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 55817
Common NameMICPUCDRAFT_55817
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family E2F/DP
Protein Properties Length: 450aa    MW: 50968.9 Da    PI: 9.4628
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
55817genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.71.5e-26138202170
  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
              r+++sL llt+kf+ llek+eeg+++ln +a++L    v  ++RRiYDi+NVLe+++liekk+kn+i+wk
    55817 138 RYDSSLSLLTKKFVFLLEKAEEGTINLNRAAESL---GV--QKRRIYDITNVLEGIGLIEKKSKNNIQWK 202
              6899******************************...**..****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-27135202IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.86E-17138201IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.0E-31138203IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.1E-24140202IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146604.74E-40213318No hitNo description
SuperFamilySSF1440746.02E-22217318No hitNo description
PfamPF164211.3E-24219317IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MIRVRVASPT AHGCTCTIEY TTEVLRNRYP IRKYESTTLY CRPYVYGNRY EGTKVPSKVR  60
KYLRTHYDTF VRKYEGNKYE STKVFTVSSK ALSYECTQLV HVRVHVHIGT TFLRCKFSIF  120
RSEALYKIMQ TPTGSTCRYD SSLSLLTKKF VFLLEKAEEG TINLNRAAES LGVQKRRIYD  180
ITNVLEGIGL IEKKSKNNIQ WKVLPPQSFG LKSGLSTVTE EIRSMQNDEI NLDEHIQNMR  240
RSMHVLLEDP AHKGNLFVSE EDIKDFFSFR SETLVAVRAP HGTTLEVPDP DDRMEIPNKR  300
YRIFLKSKGG PVEVFLVSLH DNVSGQSSKE VHFKKSPVDH SLQGAGRATP SPSRVHSSSA  360
ATLARASGHA PWTSYEEREI PAILRIAPPI SDPDFWFSDD IKEVGIGLND MYTSAGLSVL  420
LQRSARCRMN AQREWLSSNY GSQGTSTDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A6e-24132206176PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003056615.10.0e2f1-like protein
TrEMBLC1MLR60.0C1MLR6_MICPC; E2f1-like protein
STRINGXP_003056615.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP32581314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-58E2F transcription factor 3
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]