PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 55817 | ||||||||
Common Name | MICPUCDRAFT_55817 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | E2F/DP | ||||||||
Protein Properties | Length: 450aa MW: 50968.9 Da PI: 9.4628 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 83.7 | 1.5e-26 | 138 | 202 | 1 | 70 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 r+++sL llt+kf+ llek+eeg+++ln +a++L v ++RRiYDi+NVLe+++liekk+kn+i+wk 55817 138 RYDSSLSLLTKKFVFLLEKAEEGTINLNRAAESL---GV--QKRRIYDITNVLEGIGLIEKKSKNNIQWK 202 6899******************************...**..****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.8E-27 | 135 | 202 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.86E-17 | 138 | 201 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 5.0E-31 | 138 | 203 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.1E-24 | 140 | 202 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 4.74E-40 | 213 | 318 | No hit | No description |
SuperFamily | SSF144074 | 6.02E-22 | 217 | 318 | No hit | No description |
Pfam | PF16421 | 1.3E-24 | 219 | 317 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010090 | Biological Process | trichome morphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051302 | Biological Process | regulation of cell division | ||||
GO:0051446 | Biological Process | positive regulation of meiotic cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MIRVRVASPT AHGCTCTIEY TTEVLRNRYP IRKYESTTLY CRPYVYGNRY EGTKVPSKVR 60 KYLRTHYDTF VRKYEGNKYE STKVFTVSSK ALSYECTQLV HVRVHVHIGT TFLRCKFSIF 120 RSEALYKIMQ TPTGSTCRYD SSLSLLTKKF VFLLEKAEEG TINLNRAAES LGVQKRRIYD 180 ITNVLEGIGL IEKKSKNNIQ WKVLPPQSFG LKSGLSTVTE EIRSMQNDEI NLDEHIQNMR 240 RSMHVLLEDP AHKGNLFVSE EDIKDFFSFR SETLVAVRAP HGTTLEVPDP DDRMEIPNKR 300 YRIFLKSKGG PVEVFLVSLH DNVSGQSSKE VHFKKSPVDH SLQGAGRATP SPSRVHSSSA 360 ATLARASGHA PWTSYEEREI PAILRIAPPI SDPDFWFSDD IKEVGIGLND MYTSAGLSVL 420 LQRSARCRMN AQREWLSSNY GSQGTSTDN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 6e-24 | 132 | 206 | 1 | 76 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003056615.1 | 0.0 | e2f1-like protein | ||||
TrEMBL | C1MLR6 | 0.0 | C1MLR6_MICPC; E2f1-like protein | ||||
STRING | XP_003056615.1 | 0.0 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3258 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36010.1 | 1e-58 | E2F transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | 55817 |
Entrez Gene | 9681613 |
Publications ? help Back to Top | |||
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