PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 55664 | ||||||||
Common Name | MICPUCDRAFT_55664 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | CPP | ||||||||
Protein Properties | Length: 256aa MW: 28534.2 Da PI: 9.5314 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 43.7 | 5.3e-14 | 5 | 42 | 2 | 40 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +kk CnC++s+Clk+YCeCfa+g +C++ C+C +C+N+ 55664 5 RKKYCNCRNSRCLKLYCECFASGLHCDS-CNCVNCSNNL 42 6899************************.********85 PP | |||||||
2 | TCR | 52.1 | 1.3e-16 | 83 | 120 | 1 | 38 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkN 38 ++++gC+Ckks+ClkkYCeCf+a+ +Cs+ C+C +CkN 55664 83 RHNRGCHCKKSSCLKKYCECFQANIFCSDICRCMECKN 120 5899*********************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 5.8E-14 | 4 | 44 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 32.179 | 5 | 123 | IPR005172 | CRC domain |
Pfam | PF03638 | 6.9E-11 | 7 | 41 | IPR005172 | CRC domain |
SMART | SM01114 | 3.3E-18 | 83 | 124 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 4.0E-13 | 86 | 120 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MPSKRKKYCN CRNSRCLKLY CECFASGLHC DSCNCVNCSN NLASAAIRCT AVESTLERNP 60 NAFRPKIAPG VGPLEKRREG ASRHNRGCHC KKSSCLKKYC ECFQANIFCS DICRCMECKN 120 FLGSSQRVVA AKTLKVLSRT TAKGRLSAHA RRRKAVSEVS IEKAGSELLE VQEGFLPGDI 180 VCDRAVDKML ESLSFLQGCK KLEALGRETE IVQVHILNFQ YFSLTILSSS RSFSVVRKVI 240 HLRILSLWSG NHQRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 5e-28 | 3 | 127 | 8 | 127 | Protein lin-54 homolog |
5fd3_B | 5e-28 | 3 | 127 | 8 | 127 | Protein lin-54 homolog |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00269 | DAP | Transfer from AT2G20110 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003056539.1 | 0.0 | tso1-like transcription factor | ||||
TrEMBL | C1MLC3 | 0.0 | C1MLC3_MICPC; Tso1-like transcription factor | ||||
STRING | XP_003056539.1 | 0.0 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP323 | 15 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20110.1 | 2e-43 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | 55664 |
Entrez Gene | 9682023 |
Publications ? help Back to Top | |||
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