PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

55550

Common Name

MICPUCDRAFT_55550, SDP1

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

MYB_related

Protein Properties

Length: 590aa MW: 63920.7 Da PI: 8.1897

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
55550	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.3e-09	490	539	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 ++W eE lvd+v++ Ggg W+ I + +g ++Rt+ ++k++w+++l 55550 490 NPWALEEAVALVDGVAKCGGGKWADIKK-LGyqaiEHRTAVDLKDKWRNLL 539 68*********************965.56699*************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.885	484	543	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	7.9E-12	485	540	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.01E-14	486	546	IPR009057	Homeodomain-like
SMART	SM00717	7.9E-5	488	541	IPR001005	SANT/Myb domain
Pfam	PF00249	6.5E-6	490	539	IPR001005	SANT/Myb domain
CDD	cd11660	2.14E-19	491	540	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0046686	Biological Process	response to cadmium ion
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence Send to blast
MGTRNATPQA GDILSSCATP FPGSRICTLV TLGKNGLLYA PSDADVAHLE ASFIGPDLRD 60 LDNSLLRTGG NEEEERKALL ERMRAHDLIL NRIENQQSID TPGGEFHTAT NIGEDKICGD 120 SDNQVTSFGF ESSARKEANQ TQEGYFDPGG DRDFVAEDDE DDADLLCDFA PGALQADGSV 180 GLMDSEGTHV LLPPTPAPRA QSSYKMTRRP TALQRRAMIL GRAQFARQRQ EAHVLSRQFD 240 LNGSGWDDRE QCLSDNWHPT DSSDSSITSL RQQYHQVFGK ETSSNNRQWL LKRLASSHFG 300 NNSGGEIDLS AGDNSGNGTG SNLEEYTGSD EIAATHHYNS IGNGWENMFA KHSGTGCTGR 360 KQAVNKTHGT EKLVTNLSEL SPVAVTLQVP GYDLQAKTRG NHQSSKRGRN TNSHSAEGGT 420 AKTGGSSAGK KSKKCKLPEL GDHSASEQPV KSCKNSHQVP QRKLFTSRKI SGGDRRGNVG 480 ASGRRSKHHN PWALEEAVAL VDGVAKCGGG KWADIKKLGY QAIEHRTAVD LKDKWRNLLR 540 IAMLPHQPLK TAGDKKREIP ADLLTRVRDL ASKQGKKAAQ DGRVRSGSH*

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence Send to blast

MGTRNATPQA GDILSSCATP FPGSRICTLV TLGKNGLLYA PSDADVAHLE ASFIGPDLRD  60
LDNSLLRTGG NEEEERKALL ERMRAHDLIL NRIENQQSID TPGGEFHTAT NIGEDKICGD  120
SDNQVTSFGF ESSARKEANQ TQEGYFDPGG DRDFVAEDDE DDADLLCDFA PGALQADGSV  180
GLMDSEGTHV LLPPTPAPRA QSSYKMTRRP TALQRRAMIL GRAQFARQRQ EAHVLSRQFD  240
LNGSGWDDRE QCLSDNWHPT DSSDSSITSL RQQYHQVFGK ETSSNNRQWL LKRLASSHFG  300
NNSGGEIDLS AGDNSGNGTG SNLEEYTGSD EIAATHHYNS IGNGWENMFA KHSGTGCTGR  360
KQAVNKTHGT EKLVTNLSEL SPVAVTLQVP GYDLQAKTRG NHQSSKRGRN TNSHSAEGGT  420
AKTGGSSAGK KSKKCKLPEL GDHSASEQPV KSCKNSHQVP QRKLFTSRKI SGGDRRGNVG  480
ASGRRSKHHN PWALEEAVAL VDGVAKCGGG KWADIKKLGY QAIEHRTAVD LKDKWRNLLR  540
IAMLPHQPLK TAGDKKREIP ADLLTRVRDL ASKQGKKAAQ DGRVRSGSH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003056483.1	0.0	SANT domain DNA-binding protein 1
TrEMBL	C1ML23	0.0	C1ML23_MICPC; SANT domain DNA-binding protein 1
STRING	XP_003056483.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP1276	9	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	1e-20	TRF-like 6

Link Out ? help Back to Top
Phytozome	55550
Entrez Gene	9681390

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]