PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 55167 | ||||||||
Common Name | MICPUCDRAFT_55167 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 27123.7 Da PI: 10.3291 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 33 | 1.5e-10 | 123 | 167 | 1 | 50 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 s+y+GV++ + rW+A+ r ng k slg f+ +eeAa+a+++++ 55167 123 SRYRGVHQTFPTRRWEAQFRR---NG--KPTSLGCFDREEEAARAYDRMM 167 79****************555...54..*******************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.0E-6 | 123 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-10 | 123 | 168 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 10.81 | 124 | 164 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-8 | 124 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MFYKIIDDDL NDLTSLSFSE LRRKGLEFQP PAILARRSNS DTPKFHAPET CASILTCTIA 60 RTRKRIRISS WPRDSTYCKE NSNNLLSQKL SQKVRKVTNF GVRQSVHKVA RQKGISSGRT 120 YTSRYRGVHQ TFPTRRWEAQ FRRNGKPTSL GCFDREEEAA RAYDRMMVWC ELHVCENRVA 180 PKSGLKPGFA SLPLNFDCGE YENDYEGLRK MTQDELVQNL RRQGRLQATT NNFGG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003055907.1 | 1e-178 | predicted protein | ||||
TrEMBL | C1MK01 | 1e-176 | C1MK01_MICPC; Predicted protein | ||||
STRING | XP_003055907.1 | 1e-177 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP2746 | 14 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G39250.1 | 2e-09 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 55167 |
Entrez Gene | 9681297 |
Publications ? help Back to Top | |||
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