PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

53007

Common Name

MICPUCDRAFT_53007

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Nin-like

Protein Properties

Length: 1323aa MW: 135056 Da PI: 6.3801

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
53007	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.1	4.2e-24	663	710	4	51
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ++le+l+++Fs+++k+AAk+Lgv+ T+LKriCR+yGI RWP+R +ks 53007 663 GVTLEMLQQHFSKHLKQAAKDLGVGSTTLKRICRRYGITRWPRRSLKS 710 689*******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.097	645	731	IPR003035	RWP-RK domain
Pfam	PF02042	1.4E-21	664	710	IPR003035	RWP-RK domain
PROSITE profile	PS51745	12.331	1101	1182	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.4E-8	1114	1182	No hit	No description
SMART	SM00666	3.5	1114	1197	IPR000270	PB1 domain
CDD	cd05992	3.53E-5	1117	1179	No hit	No description
SuperFamily	SSF54277	1.73E-8	1118	1180	No hit	No description
Pfam	PF00564	2.6E-5	1145	1177	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	7.2E-8	1242	1308	No hit	No description
SuperFamily	SSF54277	1.41E-7	1243	1311	No hit	No description
SMART	SM00666	0.42	1244	1320	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1323 aa Download sequence Send to blast
MPRKSAAAAP PPPRADDVAN DPDLADFLKQ LVNVDDAGGD RFLHPRGAAN PDAVWSDLDN 60 LDVADNIDVS LGASGGALGA VAAAGHVRAR AVDSPSLASV ASADVRRGGE RVAVARAARD 120 ASDDKIGNDA RDSDSPASVG GDLATGSGGS GGTGSSATSA VKTLEHLGET LRVLSDQLRA 180 AQARSISRRF PYDRVGVRPH ESPPDASGAD RTAEATQRRL ASTLNDISER LDVGSLVQLF 240 VPKLQSRPGG ALVMLQTFKA FTRVKTVHQE KFWKYHRLSE GFFFNLSPGG DSNLLGLPGR 300 CFLHSRAEWT PSVCCYQPTE YPRLGCAIEC QMHSTIALPV YFDDPRVRPA LPFAVMELLL 360 DQQVTDMGRV FSICVGALRE NGLYTAGTDR LGTEDTMRAA LGSKLSRVGE GNDVALENMC 420 HALGFPLAQC WIPNDDGLLI AAGAPYCVKD AMAFPFRQIS SQISLLSGQG PVGQAHEQGT 480 MIWIDDVQNG SQLDWPLQHA TALLGLHGAC TCKILLHQKP NRGGCGGEPI EAVLEVILPS 540 NLLIAEQQRR CVEALWNYLQ NARELQIVTV GAAAATRAAG QAARGGGGVN ANANAAPGGQ 600 PGAGAGAGAG GGGGPNSKSS DLTAVHAAVG GDGGGGRAHG GNSLAGIPLP GDASVDETVM 660 NWGVTLEMLQ QHFSKHLKQA AKDLGVGSTT LKRICRRYGI TRWPRRSLKS KQGKLQQALK 720 SLYTADGAAA PGERSQGGGD SSAHGGGGAS AMSLGTRDSF MTDPASGGDG ANDASVHGPN 780 GGVGWGLGGS LPPGGLSPLT RHDSITSSPL SGRAPWPPVG GIAGGSTLSG LKRALAADQN 840 PWGGGDGGMP RPGNAGGWPG GDGGGIGKFQ RGFSWHGGDV ARRALHNQAA ETETREERTL 900 HGEYAFAQFG GGNANGRAWY PDQGASARPS PALPIPGASH AAQPTNEDFM WNSFDSGTTL 960 ASTQGGSVHG GSLHGGSVHG GSLHGNMGAV AALNAANATH FAAASPPPPS DIDPGNFLMQ 1020 SGPGSPAGRP GGALKDAADA DADARTGTGT ATGPSGGTKT SGDGSGSSFD ADSSGKTSSG 1080 LLSSGRGRGG GAAGAAGPGP GVVFKASRDD GDGGGLLRVR LLGDVTHAAL VDRLALCLRP 1140 LESERGFFKI KYQDDEDEWC LLSKDSDLEE AIAFAKQRRE NAAAAGVATA DLATALGHVR 1200 LKIESGAVGS PALASPTASA WGARDVGPPG TPSAARACGA SDATFTAKIS LGDGDTMRVK 1260 LLPSMSFRDL AARVMEATPM TLTYTDDADE SCDLSGDADL DECRAACASS GTIRVRATFG 1320 GG*

Sequence ? help Back to Top

Protein Sequence Length: 1323 aa Download sequence Send to blast

MPRKSAAAAP PPPRADDVAN DPDLADFLKQ LVNVDDAGGD RFLHPRGAAN PDAVWSDLDN  60
LDVADNIDVS LGASGGALGA VAAAGHVRAR AVDSPSLASV ASADVRRGGE RVAVARAARD  120
ASDDKIGNDA RDSDSPASVG GDLATGSGGS GGTGSSATSA VKTLEHLGET LRVLSDQLRA  180
AQARSISRRF PYDRVGVRPH ESPPDASGAD RTAEATQRRL ASTLNDISER LDVGSLVQLF  240
VPKLQSRPGG ALVMLQTFKA FTRVKTVHQE KFWKYHRLSE GFFFNLSPGG DSNLLGLPGR  300
CFLHSRAEWT PSVCCYQPTE YPRLGCAIEC QMHSTIALPV YFDDPRVRPA LPFAVMELLL  360
DQQVTDMGRV FSICVGALRE NGLYTAGTDR LGTEDTMRAA LGSKLSRVGE GNDVALENMC  420
HALGFPLAQC WIPNDDGLLI AAGAPYCVKD AMAFPFRQIS SQISLLSGQG PVGQAHEQGT  480
MIWIDDVQNG SQLDWPLQHA TALLGLHGAC TCKILLHQKP NRGGCGGEPI EAVLEVILPS  540
NLLIAEQQRR CVEALWNYLQ NARELQIVTV GAAAATRAAG QAARGGGGVN ANANAAPGGQ  600
PGAGAGAGAG GGGGPNSKSS DLTAVHAAVG GDGGGGRAHG GNSLAGIPLP GDASVDETVM  660
NWGVTLEMLQ QHFSKHLKQA AKDLGVGSTT LKRICRRYGI TRWPRRSLKS KQGKLQQALK  720
SLYTADGAAA PGERSQGGGD SSAHGGGGAS AMSLGTRDSF MTDPASGGDG ANDASVHGPN  780
GGVGWGLGGS LPPGGLSPLT RHDSITSSPL SGRAPWPPVG GIAGGSTLSG LKRALAADQN  840
PWGGGDGGMP RPGNAGGWPG GDGGGIGKFQ RGFSWHGGDV ARRALHNQAA ETETREERTL  900
HGEYAFAQFG GGNANGRAWY PDQGASARPS PALPIPGASH AAQPTNEDFM WNSFDSGTTL  960
ASTQGGSVHG GSLHGGSVHG GSLHGNMGAV AALNAANATH FAAASPPPPS DIDPGNFLMQ  1020
SGPGSPAGRP GGALKDAADA DADARTGTGT ATGPSGGTKT SGDGSGSSFD ADSSGKTSSG  1080
LLSSGRGRGG GAAGAAGPGP GVVFKASRDD GDGGGLLRVR LLGDVTHAAL VDRLALCLRP  1140
LESERGFFKI KYQDDEDEWC LLSKDSDLEE AIAFAKQRRE NAAAAGVATA DLATALGHVR  1200
LKIESGAVGS PALASPTASA WGARDVGPPG TPSAARACGA SDATFTAKIS LGDGDTMRVK  1260
LLPSMSFRDL AARVMEATPM TLTYTDDADE SCDLSGDADL DECRAACASS GTIRVRATFG  1320
GG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003063204.1	0.0	nit2-like protein 1
TrEMBL	C1N5R3	0.0	C1N5R3_MICPC; Nit2-like protein 1
STRING	XP_003063204.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5474	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	6e-19	Nin-like family protein

Link Out ? help Back to Top
Phytozome	53007
Entrez Gene	9688846

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]