PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 53007 | ||||||||
Common Name | MICPUCDRAFT_53007 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | Nin-like | ||||||||
Protein Properties | Length: 1323aa MW: 135056 Da PI: 6.3801 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 76.1 | 4.2e-24 | 663 | 710 | 4 | 51 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ++le+l+++Fs+++k+AAk+Lgv+ T+LKriCR+yGI RWP+R +ks 53007 663 GVTLEMLQQHFSKHLKQAAKDLGVGSTTLKRICRRYGITRWPRRSLKS 710 689*******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.097 | 645 | 731 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.4E-21 | 664 | 710 | IPR003035 | RWP-RK domain |
PROSITE profile | PS51745 | 12.331 | 1101 | 1182 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 4.4E-8 | 1114 | 1182 | No hit | No description |
SMART | SM00666 | 3.5 | 1114 | 1197 | IPR000270 | PB1 domain |
CDD | cd05992 | 3.53E-5 | 1117 | 1179 | No hit | No description |
SuperFamily | SSF54277 | 1.73E-8 | 1118 | 1180 | No hit | No description |
Pfam | PF00564 | 2.6E-5 | 1145 | 1177 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 7.2E-8 | 1242 | 1308 | No hit | No description |
SuperFamily | SSF54277 | 1.41E-7 | 1243 | 1311 | No hit | No description |
SMART | SM00666 | 0.42 | 1244 | 1320 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1323 aa Download sequence Send to blast |
MPRKSAAAAP PPPRADDVAN DPDLADFLKQ LVNVDDAGGD RFLHPRGAAN PDAVWSDLDN 60 LDVADNIDVS LGASGGALGA VAAAGHVRAR AVDSPSLASV ASADVRRGGE RVAVARAARD 120 ASDDKIGNDA RDSDSPASVG GDLATGSGGS GGTGSSATSA VKTLEHLGET LRVLSDQLRA 180 AQARSISRRF PYDRVGVRPH ESPPDASGAD RTAEATQRRL ASTLNDISER LDVGSLVQLF 240 VPKLQSRPGG ALVMLQTFKA FTRVKTVHQE KFWKYHRLSE GFFFNLSPGG DSNLLGLPGR 300 CFLHSRAEWT PSVCCYQPTE YPRLGCAIEC QMHSTIALPV YFDDPRVRPA LPFAVMELLL 360 DQQVTDMGRV FSICVGALRE NGLYTAGTDR LGTEDTMRAA LGSKLSRVGE GNDVALENMC 420 HALGFPLAQC WIPNDDGLLI AAGAPYCVKD AMAFPFRQIS SQISLLSGQG PVGQAHEQGT 480 MIWIDDVQNG SQLDWPLQHA TALLGLHGAC TCKILLHQKP NRGGCGGEPI EAVLEVILPS 540 NLLIAEQQRR CVEALWNYLQ NARELQIVTV GAAAATRAAG QAARGGGGVN ANANAAPGGQ 600 PGAGAGAGAG GGGGPNSKSS DLTAVHAAVG GDGGGGRAHG GNSLAGIPLP GDASVDETVM 660 NWGVTLEMLQ QHFSKHLKQA AKDLGVGSTT LKRICRRYGI TRWPRRSLKS KQGKLQQALK 720 SLYTADGAAA PGERSQGGGD SSAHGGGGAS AMSLGTRDSF MTDPASGGDG ANDASVHGPN 780 GGVGWGLGGS LPPGGLSPLT RHDSITSSPL SGRAPWPPVG GIAGGSTLSG LKRALAADQN 840 PWGGGDGGMP RPGNAGGWPG GDGGGIGKFQ RGFSWHGGDV ARRALHNQAA ETETREERTL 900 HGEYAFAQFG GGNANGRAWY PDQGASARPS PALPIPGASH AAQPTNEDFM WNSFDSGTTL 960 ASTQGGSVHG GSLHGGSVHG GSLHGNMGAV AALNAANATH FAAASPPPPS DIDPGNFLMQ 1020 SGPGSPAGRP GGALKDAADA DADARTGTGT ATGPSGGTKT SGDGSGSSFD ADSSGKTSSG 1080 LLSSGRGRGG GAAGAAGPGP GVVFKASRDD GDGGGLLRVR LLGDVTHAAL VDRLALCLRP 1140 LESERGFFKI KYQDDEDEWC LLSKDSDLEE AIAFAKQRRE NAAAAGVATA DLATALGHVR 1200 LKIESGAVGS PALASPTASA WGARDVGPPG TPSAARACGA SDATFTAKIS LGDGDTMRVK 1260 LLPSMSFRDL AARVMEATPM TLTYTDDADE SCDLSGDADL DECRAACASS GTIRVRATFG 1320 GG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003063204.1 | 0.0 | nit2-like protein 1 | ||||
TrEMBL | C1N5R3 | 0.0 | C1N5R3_MICPC; Nit2-like protein 1 | ||||
STRING | XP_003063204.1 | 0.0 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP5474 | 6 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76350.1 | 6e-19 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | 53007 |
Entrez Gene | 9688846 |
Publications ? help Back to Top | |||
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