PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

52944

Common Name

MICPUCDRAFT_52944

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

SBP

Protein Properties

Length: 477aa MW: 47048.1 Da PI: 6.8824

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
52944	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	40.6	6.8e-13	172	248	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +C v++Ce+ +++ + r + C h++a++v+ +++e r Cq C fh lsefD ++C +rL++ r r ++ 52944 172 CCLVDNCENPRKQMLQRARMYLTCAEHARAKMVMFKDEECRECQACRTFHPLSEFDGLNKTCETRLSRKKVRYRART 248 6*******************************************************************999987655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	15.511	170	247	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	4.6E-14	171	234	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.57E-11	172	248	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.2E-18	173	246	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
MTRNEPAEDA GAIATTTARG IASDTQRVGL TANAANASEA PISAEDLATA AELFGLRHAQ 60 EAPTGEGERE AASGVAHARA DATIETDTPP STEANAPAPK ATTTRETSGK EGGELAATSA 120 SLGHSSGATT ASLATTSEAT GITNATNATT TTGGTARRGG HGRAHPVKFK GCCLVDNCEN 180 PRKQMLQRAR MYLTCAEHAR AKMVMFKDEE CRECQACRTF HPLSEFDGLN KTCETRLSRK 240 KVRYRARTQS GAVSGGTVGS GGMPPLSGAG SVGAGGGGNA AKRPRVGGYN DGDHTATTPG 300 AALAESPLYW PPYGGAPGGL GTFPGSGPPV SSDAAWIIAE ASAEAFRAAV QRSVANAMGA 360 GAGGAGAAPG SVGGGNGLPG GAHAMGALPG GVHGLPCILG GAPATDALAG IPGGAHGSAV 420 MNLEWMRVNQ LLGMAQQFQA QQGAEGSNGV FPPAPPGPDV GSGGNGSAGA PGCCVM*

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

MTRNEPAEDA GAIATTTARG IASDTQRVGL TANAANASEA PISAEDLATA AELFGLRHAQ  60
EAPTGEGERE AASGVAHARA DATIETDTPP STEANAPAPK ATTTRETSGK EGGELAATSA  120
SLGHSSGATT ASLATTSEAT GITNATNATT TTGGTARRGG HGRAHPVKFK GCCLVDNCEN  180
PRKQMLQRAR MYLTCAEHAR AKMVMFKDEE CRECQACRTF HPLSEFDGLN KTCETRLSRK  240
KVRYRARTQS GAVSGGTVGS GGMPPLSGAG SVGAGGGGNA AKRPRVGGYN DGDHTATTPG  300
AALAESPLYW PPYGGAPGGL GTFPGSGPPV SSDAAWIIAE ASAEAFRAAV QRSVANAMGA  360
GAGGAGAAPG SVGGGNGLPG GAHAMGALPG GVHGLPCILG GAPATDALAG IPGGAHGSAV  420
MNLEWMRVNQ LLGMAQQFQA QQGAEGSNGV FPPAPPGPDV GSGGNGSAGA PGCCVM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003063374.1	0.0	predicted protein
TrEMBL	C1N5J4	0.0	C1N5J4_MICPC; Predicted protein
STRING	XP_003063374.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP10694	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	1e-07	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Phytozome	52944
Entrez Gene	9688813

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]