PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 52838
Common NameMICPUCDRAFT_52838
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family ERF
Protein Properties Length: 496aa    MW: 51063.4 Da    PI: 6.2535
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
52838genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.72.4e-07185225148
    AP2   1 sgykGVrwdkkrgr..WvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
            s+y+GVr++k++g   W A+          ++ ++g + t+ eAa a+ +
  52838 185 SKYRGVRYRKNTGPrpWQAH---H------RNKHIGCYATEVEAAHAYMR 225
            89***********99*****...5......**********99*****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-5185227IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MARALEERAP SPHAKRARVD EDAPAPPPEP APADDARADA PPSNEEDEDE REDNSAVDAT  60
TTVTPGNYAK EEDEDGMMSA STDDDDDSHD DDDDEARAPP VPPSEIHPPA GAQTDARAPD  120
AGGAASAKPR RGRPPIVTQM NAASTLSRLS AQQLGLAAEA RLGPKCQEDS ALMGVGKSGQ  180
PIRTSKYRGV RYRKNTGPRP WQAHHRNKHI GCYATEVEAA HAYMRSAGIT EPIMRGYRKR  240
DRKGSVSKKT RREALTLAAE RDAADALGGG FQQVHGIRGA DGVDPNGERA ARIAAIQSIA  300
AGAGGDTAVM RAMNRAREVA AVNSGYANAV AGPPGHWSGG GGNASQAALA AHRLQIARQM  360
LGGGEVSALQ RAQVAALLAA APNNAGASGV HQLAGGGAAA AAGAGTGFDA NAIQALLESA  420
ARAPAGVSGV GAGGMDAMLA QRAYQDHLDA KIRALEIQAE LEKTRAMRSE LAYRLSLMQD  480
QAQGPASFAG GGGLQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003063123.10.0predicted protein
TrEMBLC1N5790.0C1N579_MICPC; Predicted protein
STRINGXP_003063123.10.0(Micromonas pusilla)
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]