PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 51775
Common NameMICPUCDRAFT_51775
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C3H
Protein Properties Length: 419aa    MW: 45659.5 Da    PI: 10.1276
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
51775genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.4e-08290311426
              ---SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
              + C  f++ G+C +Gd+C+F+Hg
    51775 290 PVCYAFQK-GECTRGDSCRFSHG 311
              67******.*************9 PP
2zf-CCCH25.22.7e-08331353427
              ---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
              ++C  f++ G+C +Gd+C+F+H+p
    51775 331 APCYAFQK-GECTRGDSCRFSHDP 353
              79******.*************86 PP
3zf-CCCH26.89e-09363385427
              ---SGGGGTS--TTTTT-SS-SSS CS
  zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
              ++C  f++ G+C++Gd C+F+H+p
    51775 363 APCYAFQK-GECSRGDACRFSHDP 385
              69******.*************86 PP
4zf-CCCH19.81.4e-06399417625
              -SGGGGTS--TTTTT-SS-S CS
  zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
              C  f++ G+C +Gd C+F+H
    51775 399 CYAFQK-GECTRGDACRFSH 417
              999***.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF134511.0E-19236281IPR025306Probable zinc-binding domain
PROSITE profilePS5010315.197286313IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-5287312IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-6290311IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4291312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.122327354IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-4328353IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-6331353IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4332353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.155359386IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6359385IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-6363385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4364385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.197393418IPR000571Zinc finger, CCCH-type
SMARTSM003561.4395418IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-4399417IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MAKEKKEKKE KKEKKEKRKE PEESPEKADD ADDEKKSAKK AKKEKKEKKE KVRPTPSLDH  60
ESRRAARSAS RFAARSRRSR RRPRVSESMN PCNRGSPHWQ PPPASRLCRV ARGDRASPRA  120
NVARSIAGFD PHGSSRIVAT RRRRRRRVIA TERARVAPPR SPRRPSRFVD SSRATRRSDD  180
PILFPPPPPS PRLSSPQAPS PEPEAGGGSD DDDDDGFKVH TKSAADAGNP LAKEYEDITL  240
NCRDCNAEFA FSAGEQEFYQ SKGWENQPTR CTECKNAKKA RFGEGPSAGP VCYAFQKGEC  300
TRGDSCRFSH GDAGGGGGGG GSWGGGGGGG APCYAFQKGE CTRGDSCRFS HDPNAQTPQR  360
SSAPCYAFQK GECSRGDACR FSHDPNAVSG GGFKASGTCY AFQKGECTRG DACRFSHE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146RRRRRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003061992.10.0predicted protein
TrEMBLC1N1X90.0C1N1X9_MICPC; Predicted protein
STRINGXP_003061992.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP35071314
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]