PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

50595

Common Name

MICPUCDRAFT_50595

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

CAMTA

Protein Properties

Length: 1151aa MW: 116379 Da PI: 6.3611

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
50595	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	96.9	1.7e-30	53	128	2	75
CG-1 2 lkekkrwlkneeiaaiLenfekheltl..elktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKv 75 +++++rwlkn+e+++iL n++ ++++l +++ +p+ gsl+L++rk+vr+frkDG++w+kkkdgktvrE+hekLK+ 50595 53 QQSQTRWLKNTEVCDILLNHRAYDFVLspNAPIQPSAGSLFLFDRKVVRFFRKDGHEWQKKKDGKTVRETHEKLKM 128 4459*****************9998778899****************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00248	3600	41	79	IPR002110	Ankyrin repeat
PROSITE profile	PS51437	39.611	48	180	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	4.8E-28	51	149	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.1E-26	55	128	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:1.25.40.20	5.1E-15	62	74	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF81296	7.52E-15	738	824	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	5.1E-15	1033	1131	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	3.26E-14	1036	1131	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.50E-12	1038	1129	No hit	No description
PROSITE profile	PS50297	16.308	1040	1129	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.2E-4	1073	1102	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.381	1073	1105	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0050826	Biological Process	response to freezing
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005516	Molecular Function	calmodulin binding

Sequence ? help Back to Top
Protein Sequence Length: 1151 aa Download sequence Send to blast
MSGSGSGSGG RTSTLMDEGG GGDGYSPAAI VLTPPSPMGA DGASRAHIIA LLQQSQTRWL 60 KNTEVCDILL NHRAYDFVLS PNAPIQPSAG SLFLFDRKVV RFFRKDGHEW QKKKDGKTVR 120 ETHEKLKMLL RPSRVGRDGV VLVHYLKVTP GMKTERGGHG GDLSNWPAGA YPGHGFQNLF 180 GGGDSGGTTD SGLYGTLSGT FSGTISGGGT SGGAFGSRGG YSDIEIDESD LMIRSAGSSP 240 TVSQMRGAGG FGGRVGHAYA SHQGGTSVYA SSPAAAAARA AAQMQMHDAR LGRPITNDPP 300 ANVDRWWSGR GVGTGDDDEY GVNDPELEEL LRDSDMELGT PHGGAGAPGG GQGRPNELHQ 360 YLMNEIGYEG GGNAPPPPPP GSDNMRQKSW DSGLSLSVSG LTGLPSAPGE DSVHSGTIAG 420 SLGVGAPGHG QAPPPHPLAA AAAEAAAAAG PDITTSFLSP TPAPSSSADD LSGRGADRSS 480 AMRGVTSLTQ IEGKIADLQQ TLLRVASNAV HTNVEQVARL EEDLIALERG AEAMMPRAIG 540 SGSGTGGGSG GGGPGRGSRK LFGRGGDGAE HHRRGRSFDG GGGGGHRAVA QRKPPPMRWD 600 ADDDGGDSGG ADEEDDDDDD DAEKSGDDGE DPHEGLLSPL KSAAAATRRP GGAANRRSYP 660 PRHAAPPVPI ASTARGVSQS GSEMDDGATD ADDRAPSPGM AAAAMRASSA QAAQFAQRSA 720 RARAPIVTVP PTSSILWEIH DFSPEWDVES GGAKVIISGA ARPGLPEGLH LCCVFGEIEV 780 PAEQISPGVL RCRAPPRSAG RVPLYISCLG GGKRPASDIR TFEYKETSGG GAKDRRTAEV 840 RLTTGVTERD FQLRLVHLLI GADRSSVRDR SSAGGGGGGG GGGGSGGGGG GGGSGSGGGN 900 DSAAGGGGGN GGSGGGSGSG GSSNDGGGAP GASANITPAP ANPSPNPNPG ASFARKSVAA 960 LASPGTSLAD PLASLFSASP GAADDLTDED VSRVFKTALE ARLRHAISAE AKRHRVVTTG 1020 VVPNPGYVLP RSAYHRIDSG GMGLIHCVAA LGMSWAIPAM VRTGCEVNQP DRRARTALHW 1080 AAAKGHEDTV ACLLAEGANI RATARWGAGG YTAADLAAAL GHGGIAAYIS EVRSTHWFPY 1140 DPVAVVNADP *

Sequence ? help Back to Top

Protein Sequence Length: 1151 aa Download sequence Send to blast

MSGSGSGSGG RTSTLMDEGG GGDGYSPAAI VLTPPSPMGA DGASRAHIIA LLQQSQTRWL  60
KNTEVCDILL NHRAYDFVLS PNAPIQPSAG SLFLFDRKVV RFFRKDGHEW QKKKDGKTVR  120
ETHEKLKMLL RPSRVGRDGV VLVHYLKVTP GMKTERGGHG GDLSNWPAGA YPGHGFQNLF  180
GGGDSGGTTD SGLYGTLSGT FSGTISGGGT SGGAFGSRGG YSDIEIDESD LMIRSAGSSP  240
TVSQMRGAGG FGGRVGHAYA SHQGGTSVYA SSPAAAAARA AAQMQMHDAR LGRPITNDPP  300
ANVDRWWSGR GVGTGDDDEY GVNDPELEEL LRDSDMELGT PHGGAGAPGG GQGRPNELHQ  360
YLMNEIGYEG GGNAPPPPPP GSDNMRQKSW DSGLSLSVSG LTGLPSAPGE DSVHSGTIAG  420
SLGVGAPGHG QAPPPHPLAA AAAEAAAAAG PDITTSFLSP TPAPSSSADD LSGRGADRSS  480
AMRGVTSLTQ IEGKIADLQQ TLLRVASNAV HTNVEQVARL EEDLIALERG AEAMMPRAIG  540
SGSGTGGGSG GGGPGRGSRK LFGRGGDGAE HHRRGRSFDG GGGGGHRAVA QRKPPPMRWD  600
ADDDGGDSGG ADEEDDDDDD DAEKSGDDGE DPHEGLLSPL KSAAAATRRP GGAANRRSYP  660
PRHAAPPVPI ASTARGVSQS GSEMDDGATD ADDRAPSPGM AAAAMRASSA QAAQFAQRSA  720
RARAPIVTVP PTSSILWEIH DFSPEWDVES GGAKVIISGA ARPGLPEGLH LCCVFGEIEV  780
PAEQISPGVL RCRAPPRSAG RVPLYISCLG GGKRPASDIR TFEYKETSGG GAKDRRTAEV  840
RLTTGVTERD FQLRLVHLLI GADRSSVRDR SSAGGGGGGG GGGGSGGGGG GGGSGSGGGN  900
DSAAGGGGGN GGSGGGSGSG GSSNDGGGAP GASANITPAP ANPSPNPNPG ASFARKSVAA  960
LASPGTSLAD PLASLFSASP GAADDLTDED VSRVFKTALE ARLRHAISAE AKRHRVVTTG  1020
VVPNPGYVLP RSAYHRIDSG GMGLIHCVAA LGMSWAIPAM VRTGCEVNQP DRRARTALHW  1080
AAAKGHEDTV ACLLAEGANI RATARWGAGG YTAADLAAAL GHGGIAAYIS EVRSTHWFPY  1140
DPVAVVNADP *

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00501	DAP	Transfer from AT5G09410	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003055680.1	0.0	camta-like transcriptional regulator
TrEMBL	C1MIJ9	0.0	C1MIJ9_MICPC; Camta-like transcriptional regulator
STRING	XP_003055680.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5132	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09410.1	2e-25	ethylene induced calmodulin binding protein

Link Out ? help Back to Top
Phytozome	50595
Entrez Gene	9680865

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]