PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 48763 | ||||||||
Common Name | MICPUCDRAFT_48763 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | HSF | ||||||||
Protein Properties | Length: 507aa MW: 52842.4 Da PI: 5.2254 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 89.2 | 5.2e-28 | 34 | 124 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k++++++d++ +++isws+ng++f v++++ ++++ Lp++FkhsnfaSFvRQLn YgF+k ++++ eF + F++gk ell++++ 48763 34 FLWKTWNLVSDASSDHIISWSANGRTFTVWQPDLLETEHLPNTFKHSNFASFVRQLNNYGFRKCHSDR---------FEFGVEGFEQGKPELLTSLR 121 99***************************************************************999.........67****************99 PP XXX CS HSF_DNA-bind 99 rkk 101 r+ 48763 122 RHD 124 975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.7E-30 | 28 | 117 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.3E-38 | 30 | 123 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 2.04E-26 | 30 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 6.9E-15 | 34 | 57 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.8E-25 | 34 | 122 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.9E-15 | 72 | 84 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.9E-15 | 85 | 97 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 507 aa Download sequence Send to blast |
MSAATAAGSK GFSAQPGSAT GATTPFATVN VSPFLWKTWN LVSDASSDHI ISWSANGRTF 60 TVWQPDLLET EHLPNTFKHS NFASFVRQLN NYGFRKCHSD RFEFGVEGFE QGKPELLTSL 120 RRHDAPRNKK GGDAKGGGGK AAAGSASAAN ARGGGGAKKK NLMEGTPDHG AQSLEIGAYG 180 GITSEVEQLK RDRLLLLKEV MRLRDVQNNT TEEVRRLSAR LQATEQFQSQ MMSFVEAVQQ 240 QGGGANGLAG SFGNADEMIA RFGGSLGPRK AARKRRQMFL PSSSSGGGGG GSGGGGGGGV 300 AGAGVDATRS AIQEVQDEID EIDDALMTAQ AYGPLSPNPH AAIQLPENEG AWLDMLGGGD 360 DDDALVDGVD LTPASPPRVH VGGQRVRQSP LITSMSDVDL ALAAAASGGS GGNSPGETAV 420 DDADAADQAA ARRGERQRDP HPQPDAFVAN ILNRGPSLEK QLSLGFLDHM DSADIGEMVR 480 DMNIGVGSGG SDEFTRRVDA LSDVIK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 5e-18 | 30 | 122 | 16 | 119 | Heat shock factor protein 1 |
5d5u_B | 5e-18 | 30 | 122 | 25 | 128 | Heat shock factor protein 1 |
5d5v_B | 5e-18 | 30 | 122 | 25 | 128 | Heat shock factor protein 1 |
5d5v_D | 5e-18 | 30 | 122 | 25 | 128 | Heat shock factor protein 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003062948.1 | 0.0 | heat shock transcription factor | ||||
TrEMBL | C1N5D3 | 0.0 | C1N5D3_MICPC; Heat shock transcription factor | ||||
STRING | XP_003062948.1 | 0.0 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP522 | 15 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 2e-37 | heat shock transcription factor A1D |
Link Out ? help Back to Top | |
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Phytozome | 48763 |
Entrez Gene | 9688591 |
Publications ? help Back to Top | |||
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