PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

48598

Common Name

MICPUCDRAFT_48598

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 209aa MW: 22197.4 Da PI: 6.5067

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
48598	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.2	3.4e-16	111	144	1	34
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C +Cg+ ++p+WRrgp +++LCnaCG +yr+++ 48598 111 CDHCGAQDSPQWRRGPASKPMLCNACGTRYRRTN 144 9*************99999********875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57716	7.6E-12	104	148	No hit	No description
SMART	SM00401	3.4E-7	105	159	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	4.2E-12	105	146	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	11.793	105	148	IPR000679	Zinc finger, GATA-type
CDD	cd00202	1.02E-12	110	150	No hit	No description
Pfam	PF00320	1.2E-13	111	143	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MAGFARATGM RSGRPLANDA HDKQWYTLVK LDEYGGVGHV VSDRELQELE DLILSGEDPS 60 DDSSFNDGQT LSGDESREDD SVDGEEPYSE DTGPLRLPVQ VAAHQKPGGP CDHCGAQDSP 120 QWRRGPASKP MLCNACGTRY RRTNNLGPST PLGRVAAPPH GASHQAANIA KKRSPPVSPS 180 STLNPGNKKG RCGTGMNVYE RYGAGVRA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003062676.1	1e-153	predicted protein
TrEMBL	C1N3U3	1e-152	C1N3U3_MICPC; Predicted protein
STRING	XP_003062676.1	1e-153	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP450	15	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	4e-13	GATA transcription factor 26

Link Out ? help Back to Top
Phytozome	48598
Entrez Gene	9688116

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]