PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

48504

Common Name

MICPUCDRAFT_48504

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

E2F/DP

Protein Properties

Length: 1496aa MW: 147918 Da PI: 8.6051

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
48504	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	35.9	1.2e-11	1002	1045	23	71
E2F_TDP 23 givtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 g+v ++ a++L v krRR+YD++NVLea+++ e+ +k + +w+g 48504 1002 GNVPVDALAERL---GV--KRRRLYDVMNVLEAIGVTERISKGACKWHG 1045 677888899999...99..9***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.1E-16	958	1046	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM01372	2.9E-13	960	1045	IPR003316	E2F/DP family, winged-helix DNA-binding domain
Pfam	PF02319	6.2E-12	961	1045	IPR003316	E2F/DP family, winged-helix DNA-binding domain
SuperFamily	SSF46785	1.75E-8	1003	1044	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005667	Cellular Component	transcription factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1496 aa Download sequence Send to blast
MGAPAKANGN SAPAPARGAG RVCAGAIEED PSTLIPCPVI TSHPNGFIER VEPNRETHEV 60 RAYKLGKKKR SYNQVELTFD RATAGSARND DEGDDDDEVL NIYEATERGF SIDVPKDMRD 120 SALEYELKLY NGASVRALIY LVYAEPLGKT GGRSTSAKSG TMGFNASNGK VVDREGYAWL 180 PVTRGRCAKE CTGPILSAIQ RFGKQGRTQK GAAAADADKK RGAAPGAAAP GGEDKWKDAR 240 NLFVSIDEAS NHVCAFGPNK CKVFRLLFGI FAEDGVEFLG SGVSGPIRVL ANNDVPKGAA 300 CLRIRCALRD EWRGWSKPVA FDRDENPLPP STDATDRRAS TAAGHPSTAG KRKALGGGGM 360 GGGSRSPKRA NHGHHGAAEQ RRASKAAAAA AAAAAAHAAT YGGPGNASMA SVFDHHQHAF 420 GHGMDLSGLD GFAPTSAAVG PANLDGSPEG LARGFADVFT TPHHPGGAGG FNHGDLPAHL 480 DAVVRAAAAA AAANSTELPP VCTPSEKLGA GIGAGIGVGG GVGGVDALVA PPTTGGAGPR 540 FTPAHMANVL NSAGGACSLG SLGSLGSLGS AFKQSPMSVA KNGGKARAKG RTKSVVAAAA 600 AEDGRRRARA VAAAAAAAAI GAAVDAQTAT DSAAKDEEAA EADDAEADDA MVATSPEPKA 660 APATASKPGT AKNGAALSPH SWLLSVLGSG TRDGAAAMQA AVVQAALTMQ ANVGDGGLGE 720 GGATAPTPFG ATAELTGGPN TVIGARGDIA AGLRSAARPS TAAADAAAMP PPAMTVRTGG 780 ATNLGNATTG THSSLSGLSL AHTVGGGLAD VAGAAATSSA AGMHQGPQGG HDDGFGAAFG 840 GGRGALPSPN GLAPTRLLFS PLGARSGAGG GGGYDSDDEN AGAGRRGSDV GVGAGGKKSK 900 KAKRSAANET EAPWMSPNKH QSVALRAVNN ANAMTVSIMP IDGGNAPAAA KTETGPAYVR 960 KDHSLASITD RIVAEFDERN ANANASGNPP TRGGGSTAQW AGNVPVDALA ERLGVKRRRL 1020 YDVMNVLEAI GVTERISKGA CKWHGATRVE NALRALLDDA PAVVAAAERE GKNPDAAGGD 1080 ASSLKSLAVR LMQHVGFHTG GCDDDAATTR GSVAFDACAA AMRLGGVPAA DAPGANGTGA 1140 LAGAARRLHD VASILIRVGV LDFVEPEGGG KGRGELRWLG AGAVTERLAL GADGALPAEK 1200 ASGYGVGAQQ QAAAAAAAAA APPRMMGPPA DGGASFFNAG NNAFGAKQAS TRLSNFFGRA 1260 GAAPANNGGN GKKGNGKGAS VKFEDRSTLF SPPMLGGNGG VVGGFNANGA AAAAAALLKS 1320 PEWLQQLSVA TAGVAPAPGG VGASANTPQL ANNSGLASWT SPAFVGPLQA LYAWYSGAAG 1380 TKTNGDGGEN GATNARRGLG RRESGVSEDG SLGPTPMSGL SGLSGLTASL FGAGGGGSPA 1440 EVEAMMRGEA IQAAAAAAVQ AAAAGVQPRG YEAAKARAGA GFGPAVDAVE SALNC*

Sequence ? help Back to Top

Protein Sequence Length: 1496 aa Download sequence Send to blast

MGAPAKANGN SAPAPARGAG RVCAGAIEED PSTLIPCPVI TSHPNGFIER VEPNRETHEV  60
RAYKLGKKKR SYNQVELTFD RATAGSARND DEGDDDDEVL NIYEATERGF SIDVPKDMRD  120
SALEYELKLY NGASVRALIY LVYAEPLGKT GGRSTSAKSG TMGFNASNGK VVDREGYAWL  180
PVTRGRCAKE CTGPILSAIQ RFGKQGRTQK GAAAADADKK RGAAPGAAAP GGEDKWKDAR  240
NLFVSIDEAS NHVCAFGPNK CKVFRLLFGI FAEDGVEFLG SGVSGPIRVL ANNDVPKGAA  300
CLRIRCALRD EWRGWSKPVA FDRDENPLPP STDATDRRAS TAAGHPSTAG KRKALGGGGM  360
GGGSRSPKRA NHGHHGAAEQ RRASKAAAAA AAAAAAHAAT YGGPGNASMA SVFDHHQHAF  420
GHGMDLSGLD GFAPTSAAVG PANLDGSPEG LARGFADVFT TPHHPGGAGG FNHGDLPAHL  480
DAVVRAAAAA AAANSTELPP VCTPSEKLGA GIGAGIGVGG GVGGVDALVA PPTTGGAGPR  540
FTPAHMANVL NSAGGACSLG SLGSLGSLGS AFKQSPMSVA KNGGKARAKG RTKSVVAAAA  600
AEDGRRRARA VAAAAAAAAI GAAVDAQTAT DSAAKDEEAA EADDAEADDA MVATSPEPKA  660
APATASKPGT AKNGAALSPH SWLLSVLGSG TRDGAAAMQA AVVQAALTMQ ANVGDGGLGE  720
GGATAPTPFG ATAELTGGPN TVIGARGDIA AGLRSAARPS TAAADAAAMP PPAMTVRTGG  780
ATNLGNATTG THSSLSGLSL AHTVGGGLAD VAGAAATSSA AGMHQGPQGG HDDGFGAAFG  840
GGRGALPSPN GLAPTRLLFS PLGARSGAGG GGGYDSDDEN AGAGRRGSDV GVGAGGKKSK  900
KAKRSAANET EAPWMSPNKH QSVALRAVNN ANAMTVSIMP IDGGNAPAAA KTETGPAYVR  960
KDHSLASITD RIVAEFDERN ANANASGNPP TRGGGSTAQW AGNVPVDALA ERLGVKRRRL  1020
YDVMNVLEAI GVTERISKGA CKWHGATRVE NALRALLDDA PAVVAAAERE GKNPDAAGGD  1080
ASSLKSLAVR LMQHVGFHTG GCDDDAATTR GSVAFDACAA AMRLGGVPAA DAPGANGTGA  1140
LAGAARRLHD VASILIRVGV LDFVEPEGGG KGRGELRWLG AGAVTERLAL GADGALPAEK  1200
ASGYGVGAQQ QAAAAAAAAA APPRMMGPPA DGGASFFNAG NNAFGAKQAS TRLSNFFGRA  1260
GAAPANNGGN GKKGNGKGAS VKFEDRSTLF SPPMLGGNGG VVGGFNANGA AAAAAALLKS  1320
PEWLQQLSVA TAGVAPAPGG VGASANTPQL ANNSGLASWT SPAFVGPLQA LYAWYSGAAG  1380
TKTNGDGGEN GATNARRGLG RRESGVSEDG SLGPTPMSGL SGLSGLTASL FGAGGGGSPA  1440
EVEAMMRGEA IQAAAAAAVQ AAAAGVQPRG YEAAKARAGA GFGPAVDAVE SALNC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1015	1019	KRRRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003062533.1	0.0	predicted protein
TrEMBL	C1N323	0.0	C1N323_MICPC; Predicted protein
STRING	XP_003062533.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4094	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48160.2	2e-06	DP-E2F-like 1

Link Out ? help Back to Top
Phytozome	48504
Entrez Gene	9687746

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]