PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

48248

Common Name

MICPUCDRAFT_48248

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 779aa MW: 81801 Da PI: 10.2824

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
48248	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	32.9	1.2e-10	147	237	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k ++ps+v+ +l p + + ++ ++ + +g++W+ +r + l++GW++F+ +++L +gD +vF+ ++++ +l+v+++r 48248 147 FVKLMLPSHVSGGYWLQAPYGIGDFL--PDTT--STVVLTCDGEEWKTVWLVRSANN-GGLSGGWRGFAVDQRLAVGDACVFT--KERGMRLRVTIHR 237 66777777777666666555555333..2223..35667779999999996533333.359**********************..4467777998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.1E-15	141	239	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.83E-16	141	241	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.24E-15	145	237	No hit	No description
Pfam	PF02362	4.6E-9	147	238	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.419	147	239	IPR003340	B3 DNA binding domain
SMART	SM01019	4.1E-8	147	239	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 779 aa Download sequence Send to blast
MASNADITAF EMERNRRVQD NMRRMQELGI FKLAVAAAPP PKPIRAPASA RDRASRRESL 60 GERRQSLRIA SLPTPTYEEV RAEVAKHSEK QRLSSGGRRT HNTSDWSWED DDGSNDSFAN 120 AAAFARDPTA ASSVQRAPQW SPPGPAFVKL MLPSHVSGGY WLQAPYGIGD FLPDTTSTVV 180 LTCDGEEWKT VWLVRSANNG GLSGGWRGFA VDQRLAVGDA CVFTKERGMR LRVTIHRAHL 240 CGGDDAAAEK AFEEAERHAE EMMRAPGGGC RVAGDEKSAP DAVAATTEDI PHGFGTSRAL 300 HVYSRRRLGR YDASAAAAAR KRTGANPNEC LRIAKDAAPS LASLVERAIE ERKAAARERE 360 DARDASPRVP LIPRVAPPPG QDADAKSTGG VVDASEDASP IADGSVGEAA EAANKSPPAP 420 GQLPFASPKT QTRTPRDSTK RGRRGKRPAT PAGKMPAPPG SAQATPTTPP PPSTTTKRAK 480 AAAAAVAPLR QGEVAAPLDA TPACGGGDVD IDDDADADAR ARANAAANAN ATATGRAHPG 540 SRQRRTSASA MHHGWATPAE MRAEYERATG ATAGATTAAL ATARRAMTAA ASAEDATPAD 600 AAAVKRADAD APPPAPRAAR GRPPKATATA AKKKRARAAS KETLPDRADG TPLSQVFRST 660 KRGRTNSCAN ANANANATSS AAAAFVSPAA VKAGTKSPPK RGMKITESNV GAPGSYLGRR 720 VSCFWRAEAR WFEGTLVRWR VGDGYRVAYD DGDVEDGVDF PEDGETVRVL PARARAHA*

Sequence ? help Back to Top

Protein Sequence Length: 779 aa Download sequence Send to blast

MASNADITAF EMERNRRVQD NMRRMQELGI FKLAVAAAPP PKPIRAPASA RDRASRRESL  60
GERRQSLRIA SLPTPTYEEV RAEVAKHSEK QRLSSGGRRT HNTSDWSWED DDGSNDSFAN  120
AAAFARDPTA ASSVQRAPQW SPPGPAFVKL MLPSHVSGGY WLQAPYGIGD FLPDTTSTVV  180
LTCDGEEWKT VWLVRSANNG GLSGGWRGFA VDQRLAVGDA CVFTKERGMR LRVTIHRAHL  240
CGGDDAAAEK AFEEAERHAE EMMRAPGGGC RVAGDEKSAP DAVAATTEDI PHGFGTSRAL  300
HVYSRRRLGR YDASAAAAAR KRTGANPNEC LRIAKDAAPS LASLVERAIE ERKAAARERE  360
DARDASPRVP LIPRVAPPPG QDADAKSTGG VVDASEDASP IADGSVGEAA EAANKSPPAP  420
GQLPFASPKT QTRTPRDSTK RGRRGKRPAT PAGKMPAPPG SAQATPTTPP PPSTTTKRAK  480
AAAAAVAPLR QGEVAAPLDA TPACGGGDVD IDDDADADAR ARANAAANAN ATATGRAHPG  540
SRQRRTSASA MHHGWATPAE MRAEYERATG ATAGATTAAL ATARRAMTAA ASAEDATPAD  600
AAAVKRADAD APPPAPRAAR GRPPKATATA AKKKRARAAS KETLPDRADG TPLSQVFRST  660
KRGRTNSCAN ANANANATSS AAAAFVSPAA VKAGTKSPPK RGMKITESNV GAPGSYLGRR  720
VSCFWRAEAR WFEGTLVRWR VGDGYRVAYD DGDVEDGVDF PEDGETVRVL PARARAHA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003061444.1	0.0	predicted protein
TrEMBL	C1N0S8	0.0	C1N0S8_MICPC; Predicted protein
STRING	XP_003061444.1	0.0	(Micromonas pusilla)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-16	B3 family protein

Link Out ? help Back to Top
Phytozome	48248
Entrez Gene	9687130

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]