PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 48125 | ||||||||
Common Name | MICPUCDRAFT_48125 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | WOX | ||||||||
Protein Properties | Length: 203aa MW: 21433.2 Da PI: 9.5628 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.9 | 7.5e-18 | 126 | 185 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+ ql +LeelF +p+ e r++++++l ++e++V++WFqN++a++kk 48125 126 PRWNPTPAQLARLEELFLTgMGTPNGELRTQITEELaklgPINEANVYNWFQNKKARMKK 185 8*****************99*****************9999******************8 PP | |||||||
2 | Wus_type_Homeobox | 77.7 | 1.6e-25 | 125 | 185 | 3 | 63 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63 +RW+Ptp Q+ Leel+ +G+ tPn e ++it+eL++ G i+++NV++WFQN+kaR ++ 48125 125 APRWNPTPAQLARLEELFLTGMGTPNGELRTQITEELAKLGPINEANVYNWFQNKKARMKK 185 68********************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.37E-13 | 118 | 188 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.147 | 121 | 186 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.5E-9 | 123 | 190 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.6E-11 | 126 | 191 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.85E-8 | 126 | 187 | No hit | No description |
Pfam | PF00046 | 1.3E-15 | 126 | 185 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MEQQAQPAPS PAPSPAPPAA EAPPPQWRPT AEDAAKLTPT QLDTLRHQIA AFSHVCNQAI 60 ILAQQKVEEG KSFNAPGNSL PGRGAGVMHA LSSSMGISAS GAGAQPSYPA PVYNKNPDGP 120 RGPSAPRWNP TPAQLARLEE LFLTGMGTPN GELRTQITEE LAKLGPINEA NVYNWFQNKK 180 ARMKKAERER EAALAAGRPP PV* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00617 | PBM | Transfer from AT4G35550 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003061270.1 | 1e-144 | predicted protein | ||||
TrEMBL | C1MZS6 | 1e-142 | C1MZS6_MICPC; Predicted protein | ||||
STRING | XP_003061270.1 | 1e-143 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP6445 | 6 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 6e-18 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | 48125 |
Entrez Gene | 9686445 |
Publications ? help Back to Top | |||
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