PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

47798

Common Name

MICPUCDRAFT_47798

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

bZIP

Protein Properties

Length: 449aa MW: 44832.9 Da PI: 10.7985

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
47798	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.1	9.1e-09	211	255	3	47
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47 e kr +r q NRe+Ar+ +RK ++ +eL + +eL++eN +L+ 47798 211 EAKRRKRVQANRESARETIRRKHEKYDELSAREEELTGENATLRG 255 68*****************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	8.1E-5	207	273	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.1E-7	211	255	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.634	211	274	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.6E-5	213	266	No hit	No description
SuperFamily	SSF57959	5.16E-5	213	262	No hit	No description
CDD	cd14702	2.50E-12	214	254	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence Send to blast
MAPPPPAKKK TRTARGAAAA TNDGDAATAR PRAAEEKKPS SALQWGRKQT RTTSEADPRP 60 KAARGPSTTA NARGGSGAND AGIPGANEQH PSAAITGDSV GFTSLLTLAD AGVQLERRSA 120 QKQRRSDKIA ASKSNAAAAA AAAAAETAAN GFVAQSGRKG SNIATAASRG AASGAAPSSA 180 GAPGSSVVAE NPGKKRGRGP NKKEESEEDL EAKRRKRVQA NRESARETIR RKHEKYDELS 240 AREEELTGEN ATLRGDVAEA LRRARALAAE NDALREKVRA AAAEKGVACP AFGERARVEP 300 PSEFQPESAG VVPVAGVRML LDGGAAPVAV GGAAAQFPAI AAAGPTNEGR DGGECAGTSV 360 TTAAAAAAAA AATAAAAMRP AAAAAWPNPQ MAFGMFTSNG FNMANMPPPH LWNPAAMAAA 420 LGGGGWGVPL AQGAATTAAT TAAPAAKK*

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence Send to blast

MAPPPPAKKK TRTARGAAAA TNDGDAATAR PRAAEEKKPS SALQWGRKQT RTTSEADPRP  60
KAARGPSTTA NARGGSGAND AGIPGANEQH PSAAITGDSV GFTSLLTLAD AGVQLERRSA  120
QKQRRSDKIA ASKSNAAAAA AAAAAETAAN GFVAQSGRKG SNIATAASRG AASGAAPSSA  180
GAPGSSVVAE NPGKKRGRGP NKKEESEEDL EAKRRKRVQA NRESARETIR RKHEKYDELS  240
AREEELTGEN ATLRGDVAEA LRRARALAAE NDALREKVRA AAAEKGVACP AFGERARVEP  300
PSEFQPESAG VVPVAGVRML LDGGAAPVAV GGAAAQFPAI AAAGPTNEGR DGGECAGTSV  360
TTAAAAAAAA AATAAAAMRP AAAAAWPNPQ MAFGMFTSNG FNMANMPPPH LWNPAAMAAA  420
LGGGGWGVPL AQGAATTAAT TAAPAAKK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	198	GKKRGRG
2	193	215	KKRGRGPNKKEESEEDLEAKRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003060235.1	0.0	predicted protein
TrEMBL	C1MWK5	0.0	C1MWK5_MICPC; Predicted protein
STRING	XP_003060235.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15374	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32150.1	9e-08	basic region/leucine zipper transcription factor 68

Link Out ? help Back to Top
Phytozome	47798
Entrez Gene	9685376

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]