PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

47784

Common Name

MICPUCDRAFT_47784

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

MYB_related

Protein Properties

Length: 1061aa MW: 112210 Da PI: 10.187

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
47784	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.3	2.1e-09	728	769	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT+eE +++ + ++ +G++ +k+Ia + gRt +c+ ++++ 47784 728 PWTPEEKKIFHEKFASYGKN-FKRIATFID-GRTTADCVVYYYQ 769 8***************99.*****.******99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.97E-14	713	773	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-7	723	771	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.482	724	775	IPR017884	SANT domain
SMART	SM00717	5.3E-9	725	773	IPR001005	SANT/Myb domain
CDD	cd00167	5.41E-7	728	769	No hit	No description
Pfam	PF00249	4.9E-7	728	769	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-5	919	969	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.232	921	972	IPR017884	SANT domain
SuperFamily	SSF46689	4.26E-9	921	972	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-6	922	970	IPR001005	SANT/Myb domain
Pfam	PF00249	1.1E-5	925	968	IPR001005	SANT/Myb domain
CDD	cd00167	3.71E-4	925	968	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1061 aa Download sequence Send to blast
MDRDRDRARN RSGFGGGYPP RQAGGSNDER RDQPGWQQNN AGPDRDRDRS SRPSAWGQGL 60 RGVNGPTSSG AGASHGGRGG GQGPYHNRGP NAGGTGWDRP SGNGGGARPS LLASQRPRMG 120 MGGSKYGANP TTATIVRNPS SYGRADSRDR SPPRSLDRVA SASDGGQWRG DEREEGEAGE 180 VRTRRDSRGD SRFGGGGGGW DKPQPPAPAP APAPAATATP TEEGELPPAP APAPIARQAS 240 APAATAATPE ESPAPAKRKK LGWGQGLARG KSLPTPLAGA GAGGDDRIPT PSLDGQPPLP 300 FGPPPGSTGG GPGLDGGSSN PYDISSFRGD ANRTPPLPSG APPPDARKRD PFIAVDTPGG 360 VVSAPSPWGH SEDSLPGSAG GRGVGGGGAV DPIARAAAAK AAKAEAAARK EMMRDIELKK 420 ASILEKMEET DAAIGVLERD IAESEDKGEN DREQVEAQRT HEDARLRREL EGARARVQHA 480 EKAATRAEAR AEEREKHAEE IASGVAQEMD DDELARAAEA AARAVQRMLA GREPRHALVK 540 RVCDRNKSLA AKSHLGLKTT CGLPLPHEHE RVAVDEIAAR NVAAEAAPER AAIKDAVVSV 600 LRRRGAHVAD KELTLAVTYL KRREMWKMRV LRAAHAKLEK EKKEQGSSSG RGRGGRASMA 660 DTFGTVRSDY EQELLIRQLQ NRERLKTLTK LPAMVLDPEE KRLAVFRTRN ALVEDPYGEM 720 EQLKKVRPWT PEEKKIFHEK FASYGKNFKR IATFIDGRTT ADCVVYYYQR QKTDDGFRGR 780 RKALAKKRRA YAEAQRMTGG AWKGPHAAQA VAAQAQAAKA AAKAKEEEEA RRGALGVEAR 840 QERAALAAAA RAEKKAKEKK KAKAAKAAAE AAAANESEEE DDLPIAAPKK KSKGGGSGDK 900 LESADDAVAA TSDAKDAKED KAAEKWTSKE RARFLEELLE HGRDFKAVAA ALPSKSATAC 960 KAFFAKHKKS LGLEKIVEEH ARNVKAKKEK EEKGDVAAGE AAAAAAAAAA VPDVPDMKTE 1020 TKPEVAAPPS VSGAGNGGKK RKAEDADDGK DAKVAKTEDA *

Sequence ? help Back to Top

Protein Sequence Length: 1061 aa Download sequence Send to blast

MDRDRDRARN RSGFGGGYPP RQAGGSNDER RDQPGWQQNN AGPDRDRDRS SRPSAWGQGL  60
RGVNGPTSSG AGASHGGRGG GQGPYHNRGP NAGGTGWDRP SGNGGGARPS LLASQRPRMG  120
MGGSKYGANP TTATIVRNPS SYGRADSRDR SPPRSLDRVA SASDGGQWRG DEREEGEAGE  180
VRTRRDSRGD SRFGGGGGGW DKPQPPAPAP APAPAATATP TEEGELPPAP APAPIARQAS  240
APAATAATPE ESPAPAKRKK LGWGQGLARG KSLPTPLAGA GAGGDDRIPT PSLDGQPPLP  300
FGPPPGSTGG GPGLDGGSSN PYDISSFRGD ANRTPPLPSG APPPDARKRD PFIAVDTPGG  360
VVSAPSPWGH SEDSLPGSAG GRGVGGGGAV DPIARAAAAK AAKAEAAARK EMMRDIELKK  420
ASILEKMEET DAAIGVLERD IAESEDKGEN DREQVEAQRT HEDARLRREL EGARARVQHA  480
EKAATRAEAR AEEREKHAEE IASGVAQEMD DDELARAAEA AARAVQRMLA GREPRHALVK  540
RVCDRNKSLA AKSHLGLKTT CGLPLPHEHE RVAVDEIAAR NVAAEAAPER AAIKDAVVSV  600
LRRRGAHVAD KELTLAVTYL KRREMWKMRV LRAAHAKLEK EKKEQGSSSG RGRGGRASMA  660
DTFGTVRSDY EQELLIRQLQ NRERLKTLTK LPAMVLDPEE KRLAVFRTRN ALVEDPYGEM  720
EQLKKVRPWT PEEKKIFHEK FASYGKNFKR IATFIDGRTT ADCVVYYYQR QKTDDGFRGR  780
RKALAKKRRA YAEAQRMTGG AWKGPHAAQA VAAQAQAAKA AAKAKEEEEA RRGALGVEAR  840
QERAALAAAA RAEKKAKEKK KAKAAKAAAE AAAANESEEE DDLPIAAPKK KSKGGGSGDK  900
LESADDAVAA TSDAKDAKED KAAEKWTSKE RARFLEELLE HGRDFKAVAA ALPSKSATAC  960
KAFFAKHKKS LGLEKIVEEH ARNVKAKKEK EEKGDVAAGE AAAAAAAAAA VPDVPDMKTE  1020
TKPEVAAPPS VSGAGNGGKK RKAEDADDGK DAKVAKTEDA *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	379	387	GGRGVGGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003060207.1	0.0	predicted protein
TrEMBL	C1MWF5	0.0	C1MWF5_MICPC; Predicted protein
STRING	XP_003060207.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2883	10	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	6e-20	MYB family protein

Link Out ? help Back to Top
Phytozome	47784
Entrez Gene	9685354

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]