PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 47224
Common NameMICPUCDRAFT_47224
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family WOX
Protein Properties Length: 582aa    MW: 64247 Da    PI: 5.4384
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
47224genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.4e-17474535157
               TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
  Homeobox   1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
               r+ R+++t+ ql +LeelF     +p++e+r++++++l     ++e++V++WF+N++ k+k+
     47224 474 RSARWNPTPAQLARLEELFLTgMGTPKREQRTQITEELaklgPINEANVFNWFKNKKSKMKR 535
               679*****************99*****************9999******************7 PP
2Wus_type_Homeobox73.63.1e-24475535363
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63 
                        ++RW+Ptp Q+  Leel+ +G+ tP++e+ ++it+eL++ G i+++NVf+WF+N+k++ ++
              47224 475 SARWNPTPAQLARLEELFLTGMGTPKREQRTQITEELAKLGPINEANVFNWFKNKKSKMKR 535
                        78*******************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.40.3601.1E-4356433IPR008962PapD-like
Gene3DG3DSA:1.10.10.603.0E-9471540IPR009057Homeodomain-like
PROSITE profilePS5007112.341471536IPR001356Homeobox domain
SuperFamilySSF466897.27E-12473536IPR009057Homeodomain-like
SMARTSM003892.3E-7473540IPR001356Homeobox domain
PfamPF000465.6E-15474535IPR001356Homeobox domain
CDDcd000862.81E-7474535No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MIHMGITECA DWNLREYVRG LTLAQVVELS GIPSEERAKT MLISLGIMEC ADWKHLPDLR  60
PPTNDPGDDD LTDEDENAPS TMLAPDLGRD DAAATERDGF WEDIAPTQLT APEGVEEEEV  120
DDEEDHAFTE KTKTPPVPRL TPEVAKSHTM EQLRDMYNYK YVTHVKMMMS RNGITECADC  180
ICVRGFWTPK CTAELAKTLP GRRLAPEVAE SHTMEQLRDM YNCNDVAHVK SMMTRNGITE  240
CADWICVRGR WTPKCTAGLA KMLTLAEMQV MYDLSEPVVK AALIQRGITQ CADWTAPPVQ  300
AVATPQPLTL PGKQIEPAAA PRLTIAAAHD KSAGAQPSYQ APVYNKNPDG TKNSILAVDP  360
PLLDFGPIAS DDVGDHLVTI KNTNKEMPVD FTAPRIKFFK TTPSSGVIPA GQQVSVVVRY  420
EPKNLGAHGE RLAINALGVN GEIIQTTTLI VKGVSPQGPS ARANSLVSRP HLERSARWNP  480
TPAQLARLEE LFLTGMGTPK REQRTQITEE LAKLGPINEA NVFNWFKNKK SKMKRDASQK  540
GGHEKENASS RVFTPRDYTL LELMQRKPRV NDDDADASFR S*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003058382.10.0predicted protein
TrEMBLC1MST90.0C1MST9_MICPC; Predicted protein
STRINGXP_003058382.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP644567
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.17e-15WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]