PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

46920

Common Name

MICPUCDRAFT_46920

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 327aa MW: 33926.6 Da PI: 4.971

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
46920	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.8	2.8e-09	161	214	4	57
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 ++ r+ +NR +A +sR RK+ae+++L+ ++ eLe N L ++ + e+a 46920 161 ERARERLVRNRASAAASRMRKRAEMDCLRARCRELERINAHLTYAVQCAQAECA 214 34445999*******************************999887777777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.0E-12	154	218	No hit	No description
SMART	SM00338	4.5E-5	155	222	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	6.88E-8	162	217	No hit	No description
Pfam	PF00170	2.3E-7	162	217	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	166	180	IPR004827	Basic-leucine zipper domain
CDD	cd14812	6.90E-16	167	214	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MTRVASPLPA ATFDFDALDD ACLDLDGIEA WLDDVHGDVV ASGILLEASN ATTPLDAFAV 60 DARDDDDAAG RRGRDKKRAR RDALSAAATS SSPPATPPHD PWRAASTRPP AAQIATAPSR 120 GGGDGSDSAA SDEDLVFSAG PAAGTTTTTT TTTDDDDEER ERARERLVRN RASAAASRMR 180 KRAEMDCLRA RCRELERINA HLTYAVQCAQ AECAGLRRGM AATTDGDAAV TGTTGTTGTP 240 PGPAGMFFPP PPGMFGIPLV PLPPLPGKKR ASRPVATPPT PATEDDADIE RRRTSSSTAT 300 AATTTTNSLF ALSASARAFV ALSPRL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003057578.1	0.0	predicted protein
TrEMBL	C1MPH5	0.0	C1MPH5_MICPC; Predicted protein
STRING	XP_003057578.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP15358	2	2

Link Out ? help Back to Top
Phytozome	46920
Entrez Gene	9683110

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]