PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

46781

Common Name

MICPUCDRAFT_46781

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Nin-like

Protein Properties

Length: 410aa MW: 41245.5 Da PI: 10.393

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
46781	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.8	6.6e-26	10	60	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k++++e+ls++F+lpi+d+A++Lg+c+TvLK++CR++GI RWP+Rk+k+l 46781 10 SKSLTVEELSANFHLPINDVARKLGLCVTVLKQRCREHGITRWPYRKVKKL 60 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.576	1	80	IPR003035	RWP-RK domain
Pfam	PF02042	5.5E-22	12	60	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MPKKRGGGQS KSLTVEELSA NFHLPINDVA RKLGLCVTVL KQRCREHGIT RWPYRKVKKL 60 DTIIHALEVA APGRAAAAAP IAADSAEASE KLALSVGDAE RERLESVRKT REVLITDPNS 120 KAHLRIGKLK AVRRRVARVS AGAGGDSSDR DTTTDDGYAR RRLSTGSGNS GGVDGLLEAA 180 ASLSDGETTP GTPRRGAKGE HTPRERSPRT SGRSTFGDDD IAEELGNAAA ALGALTEAAL 240 GRASGGGGEA QTASKPAAAA LIAKPAPAPA LGGFDPTAFA AQLAAFTPPP AAAAAAQAAR 300 GAAPVPTMPN MMAACMNPSL MFAWMSGVAN AAAAAQPAGV GVGVGPGQAA GAAAWNPNAF 360 AQMLAQANAF TARAQAQAQA AVQAAAGQQS AVAPPAAPPA NIESAHQPL*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MPKKRGGGQS KSLTVEELSA NFHLPINDVA RKLGLCVTVL KQRCREHGIT RWPYRKVKKL  60
DTIIHALEVA APGRAAAAAP IAADSAEASE KLALSVGDAE RERLESVRKT REVLITDPNS  120
KAHLRIGKLK AVRRRVARVS AGAGGDSSDR DTTTDDGYAR RRLSTGSGNS GGVDGLLEAA  180
ASLSDGETTP GTPRRGAKGE HTPRERSPRT SGRSTFGDDD IAEELGNAAA ALGALTEAAL  240
GRASGGGGEA QTASKPAAAA LIAKPAPAPA LGGFDPTAFA AQLAAFTPPP AAAAAAQAAR  300
GAAPVPTMPN MMAACMNPSL MFAWMSGVAN AAAAAQPAGV GVGVGPGQAA GAAAWNPNAF  360
AQMLAQANAF TARAQAQAQA AVQAAAGQQS AVAPPAAPPA NIESAHQPL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003057382.1	0.0	predicted protein
TrEMBL	C1MMD3	0.0	C1MMD3_MICPC; Predicted protein
STRING	XP_003057382.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP84	16	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	3e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	46781
Entrez Gene	9682351

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]