PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 46527
Common NameMICPUCDRAFT_46527
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB_related
Protein Properties Length: 633aa    MW: 68221.4 Da    PI: 6.5293
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
46527genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-07136178347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W + E+ l+ +a +++G + W++ a+++g +R      s+ qky
            46527 136 PWDETEERLFREALTLHGRD-WHACAAHVG-TRDHRAFTSHAQKY 178
                      7*****************77.*********.99777777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.028129183IPR017930Myb domain
SuperFamilySSF466892.69E-6131178IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-4133167IPR009057Homeodomain-like
SMARTSM007171.3E-4133181IPR001005SANT/Myb domain
CDDcd001672.77E-4136166No hitNo description
CDDcd080673.90E-71354525No hitNo description
SuperFamilySSF1027127.85E-15359462No hitNo description
PfamPF013984.8E-10361461IPR000555JAB1/MPN/MOV34 metalloenzyme domain
Gene3DG3DSA:3.40.140.102.0E-13379482No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MADPDAASAA LIAKLMAEEN PYGDEGDYLE YNDDSDDGDY GKPKRKKKKK APPKPKPIKA  60
PKEPKSPKEP QASKRPPSAV DTKPQDGEND EHAANWIGIA AAAGAPATTT VVVEEFTETG  120
RRKRKDTGAK REKARPWDET EERLFREALT LHGRDWHACA AHVGTRDHRA FTSHAQKYFI  180
KLCLQGKQLP VKVRESGDGF TLSGKPLDPT SAAAKQYGFK PDTAGLSAEQ LAEMHAAAAK  240
EKARAREEKA RAKEEKALAK EEREEVRAAA AAERTANRAT GGSKRAYTMK RVDDDRYVSS  300
EDDAPPPEPT EYAKNRPRRD AAVASNFRDA AGGTLELHQM RKFSSAAPGS KTPNAQPFAL  360
TVSSDAMLIM DLHSHLCVNE VIGYLGGTWN AATRTVSIEK AFPGRGVASG SDVEMDPVCE  420
VELKARVEAE KLTVVGWYHS HPVFQPTPSG VDVDNQLNYQ ALFRDAECDV EPFVGFIVGP  480
YDVRLPSPTS EVTAFCAKRL KGGGGVRDVP YACEYAVTGG SLSTENDAAP AAAAATTMTT  540
TAAVGDATIE AMKAVVIANE NVDGRVNPTE LWRPFATYLN GVAGGGPTTK LAKLRASLNA  600
RLPAGTTELE REDVLDGVAK QMQESWKLDL GY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14349KRKKKKK
2120125RRKRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003056349.10.0predicted protein
TrEMBLC1MK990.0C1MK99_MICPC; Predicted protein
STRINGXP_003056349.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP229888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.18e-08MYB_related family protein
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]