PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 43666
Common NameMICPUCDRAFT_43666
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family HSF
Protein Properties Length: 189aa    MW: 21042.7 Da    PI: 10.0999
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
43666genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind89.44.6e-28111022101
                   HHHHHHHHHCTG..GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeilede..elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                   F++kly+++ede   + + +swse+g++f +++   f++++Lp+yFkh nf+SFvRQLn Y F+k ++ +         w+F++++F +g ++ + +
         43666  11 FIRKLYHMIEDEvpPY-DNVSWSESGREFTIHNVAAFSNTLLPRYFKHANFSSFVRQLNSYCFRKCDNVR---------WSFSNPYFVRGGESAMVR 97 
                   9*********874244.56************************************************999.........****************** PP

                   XXXXX CS
  HSF_DNA-bind  97 ikrkk 101
                   i+r+ 
         43666  98 IRRRL 102
                   ***95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-30395IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-347101IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.75E-258101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-2511101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-75062IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.5E-76375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MSTRRERAPP FIRKLYHMIE DEVPPYDNVS WSESGREFTI HNVAAFSNTL LPRYFKHANF  60
SSFVRQLNSY CFRKCDNVRW SFSNPYFVRG GESAMVRIRR RLPKPRNEEA ASAAAARRDA  120
ASASAPAPPL EPSNDGAAAD ARNAALSLAL KSAMDARAAA EIKTAVEAQA RSIHWFPYDP  180
VRVVNADP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-16810226130Heat shock factor protein 1
5d5v_B1e-16810226130Heat shock factor protein 1
5d5v_D1e-16810226130Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003064829.11e-135heat shock transcription factor
TrEMBLC1NA101e-133C1NA10_MICPC; Heat shock transcription factor
STRINGXP_003064829.11e-134(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP5221523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.15e-28heat shock factor 4
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]