PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

40168

Common Name

MICPUCDRAFT_40168

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

AP2

Protein Properties

Length: 414aa MW: 42957.2 Da PI: 9.4843

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
40168	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	21.9	4.3e-07	350	399	2	54
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 gy GV++ ++ rW+A + dp ++ lg+f +e Aa+a++aa+ k + 40168 350 GYLGVTRPLWTTRWEANLVDP-----AsaETVFLGNFSEKESAARAYDAAAMKAR 399 689*999****9997.....337********************9977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	7.7E-5	350	412	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.28E-9	350	401	IPR016177	DNA-binding domain
PROSITE profile	PS51032	12.47	350	411	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	6.4E-10	351	399	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MDDDASPPRA RLGHLRGRGR RATAAATEAD VATRDGSDCS ESAGGGVDRT CGVLAPPPPP 60 SSATTTTTTT TSPTTTMQAW ERERELEQTR SWRALLEADD LFDDGAGCGA RVAVARAARY 120 APSHQTHQTH PHVAHHHPYA HFGGEYAGGG GAQREGVARG VVSQLRRSHT VSGYGPSVGL 180 GFGFDRTPPD LSAAAAAAAA ASAAVEMQRE GARHGANGRL RVARVGRSPP RGSLVDRLRA 240 SAERDPPPRL RGADGAPRDE RDRSRDAAPV GRGARLPPHL RRTQSQPARV SDGRAFCSPT 300 SVAIARDGAG AGAGADARGG FEVTFPASEE AAAAAAAAAA AQASDPRPFG YLGVTRPLWT 360 TRWEANLVDP ASAETVFLGN FSEKESAARA YDAAAMKARS TVYTGPHTTA SAW*

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MDDDASPPRA RLGHLRGRGR RATAAATEAD VATRDGSDCS ESAGGGVDRT CGVLAPPPPP  60
SSATTTTTTT TSPTTTMQAW ERERELEQTR SWRALLEADD LFDDGAGCGA RVAVARAARY  120
APSHQTHQTH PHVAHHHPYA HFGGEYAGGG GAQREGVARG VVSQLRRSHT VSGYGPSVGL  180
GFGFDRTPPD LSAAAAAAAA ASAAVEMQRE GARHGANGRL RVARVGRSPP RGSLVDRLRA  240
SAERDPPPRL RGADGAPRDE RDRSRDAAPV GRGARLPPHL RRTQSQPARV SDGRAFCSPT  300
SVAIARDGAG AGAGADARGG FEVTFPASEE AAAAAAAAAA AQASDPRPFG YLGVTRPLWT  360
TRWEANLVDP ASAETVFLGN FSEKESAARA YDAAAMKARS TVYTGPHTTA SAW*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003059461.1	0.0	predicted protein
TrEMBL	C1MUA3	0.0	C1MUA3_MICPC; Predicted protein
STRING	XP_003059461.1	0.0	(Micromonas pusilla)

Link Out ? help Back to Top
Phytozome	40168
Entrez Gene	9684901

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]