PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

39571

Common Name

MICPUCDRAFT_39571

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Nin-like

Protein Properties

Length: 1238aa MW: 126923 Da PI: 6.3407

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
39571	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	74.9	9.6e-24	636	684	3	51
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 + ++le l+++Fs+++k+AAk+Lgv+ T+LKriCR+yGI RWP+R +ks 39571 636 WGVTLEILQQHFSKHLKQAAKDLGVGSTTLKRICRRYGITRWPRRSLKS 684 5689*******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.392	619	705	IPR003035	RWP-RK domain
Pfam	PF02042	4.0E-21	638	684	IPR003035	RWP-RK domain
PROSITE profile	PS50194	9.465	708	756	IPR017868	Filamin/ABP280 repeat-like
PROSITE profile	PS51745	11.158	992	1082	IPR000270	PB1 domain
SMART	SM00666	3.5	1007	1086	IPR000270	PB1 domain
CDD	cd05992	8.35E-6	1010	1078	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.7E-7	1042	1080	No hit	No description
Pfam	PF00564	2.4E-5	1045	1076	IPR000270	PB1 domain
SuperFamily	SSF54277	4.58E-8	1045	1078	No hit	No description
SuperFamily	SSF54277	3.92E-6	1141	1219	No hit	No description
Gene3D	G3DSA:3.10.20.240	3.1E-6	1141	1215	No hit	No description
SMART	SM00666	0.052	1143	1228	IPR000270	PB1 domain
PROSITE profile	PS51745	11.212	1143	1226	IPR000270	PB1 domain
Pfam	PF00564	6.1E-5	1144	1222	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1238 aa Download sequence Send to blast
MPRKSAAAAP PPPSPADDVA NEPDLADFLK QLVNVDDVGV GDAGGDRFLH PRGAANADAV 60 WSDLDNLDVA DPIYMSLGAG GGALGALAAA DHVRERVVDS PSPASVAGAN GRGERDTRKE 120 VAENRRDSNS PASVGGEPTG SGGRGGSGGP GSSAASAVKT FEHLGETLRV LSDQLRAARR 180 PHESVPEVGG ADRTAEATQR RLASTLDDIS ERLDVGSLVQ LFVPKLQSRT GGALVMLQTF 240 KAFTRVKTVH REKFWKYHRM SEGFFFNLSP GGDSNLLGLP GRCFLHSRPE WTPSVCCYQP 300 TEYPRLGCAI DCQMHSTIAL PVYFDDPRVR PAMPFAVMEL LLDQQVTDMG RVFDTCVGAL 360 RGNGLYTAGT DRLGTEDTMR AALGSKLSRV GEGNDVALEN MCHALGFPLA QCWIPNDDGL 420 LIAAGAPYCV KDAMAFPFRQ ISSQISLLGG QGPVGQVYEQ GTMIWVDDVQ NGSQVDWPLQ 480 HATALLGLHG ACTCKIVLHQ KHPRGGGGGA AGEPIEAVLE VILPSNLLIA EQQRRSVDAL 540 WNYLQNSTEL RLVTGGASAA TRAASQAQAA RGGGAKATAN ANAARGGAEL NSRSSDLTAA 600 VGGDGDGAGG RAHGGNLLAG IPLPGDANAE ENVPTWGVTL EILQQHFSKH LKQAAKDLGV 660 GSTTLKRICR RYGITRWPRR SLKSKQGKLQ QVLKSLYTGD GAAEASPQGG GDASLARASG 720 GGGESAMSLG TRDSFMTDPT SGGDGANDAS VHGPSGGGGW GVGVGGSLPH GGGLSPLTRH 780 DSITSSPLSG RPACPPVGGL AGGHNLSGLK RALAADQNPW GGGGVGMPRP GNAGGRPGGD 840 GDGVGVGKFQ RGFSWHGGDV ARRALHNDAE TRGEWTLHGE LTFAQLGGGP GRAGYPEQGA 900 AAHPSSAWPI PGASHDRGGH HGGAGPTNED LKDAADADAD TAGARARATA AGPSGGTTTS 960 DDGGGSSFDA DSSGKTSLLS PSECAAAAGG AGVVFKASIC GDGDGGGGLL RARLLGDVTR 1020 AALVDRLALC LRPRDPAEPG AGEKPGFKIK YQDDEDEWCL LSKDSDLEEA IAFAKQRRER 1080 AAASGTAADL ATALGHVRLK IEGASPSPTA AASALDRRAD DVPARGGGTP LSAARACGAS 1140 DTTFTAKISL GDGDTMRVKL VPGMSFRDLA SVVTEASGGA AARRPATPTL TYTDDADESC 1200 DLRGDADLDE CRAACARSGT IRVRATFGGG GDQRLRV*

Sequence ? help Back to Top

Protein Sequence Length: 1238 aa Download sequence Send to blast

MPRKSAAAAP PPPSPADDVA NEPDLADFLK QLVNVDDVGV GDAGGDRFLH PRGAANADAV  60
WSDLDNLDVA DPIYMSLGAG GGALGALAAA DHVRERVVDS PSPASVAGAN GRGERDTRKE  120
VAENRRDSNS PASVGGEPTG SGGRGGSGGP GSSAASAVKT FEHLGETLRV LSDQLRAARR  180
PHESVPEVGG ADRTAEATQR RLASTLDDIS ERLDVGSLVQ LFVPKLQSRT GGALVMLQTF  240
KAFTRVKTVH REKFWKYHRM SEGFFFNLSP GGDSNLLGLP GRCFLHSRPE WTPSVCCYQP  300
TEYPRLGCAI DCQMHSTIAL PVYFDDPRVR PAMPFAVMEL LLDQQVTDMG RVFDTCVGAL  360
RGNGLYTAGT DRLGTEDTMR AALGSKLSRV GEGNDVALEN MCHALGFPLA QCWIPNDDGL  420
LIAAGAPYCV KDAMAFPFRQ ISSQISLLGG QGPVGQVYEQ GTMIWVDDVQ NGSQVDWPLQ  480
HATALLGLHG ACTCKIVLHQ KHPRGGGGGA AGEPIEAVLE VILPSNLLIA EQQRRSVDAL  540
WNYLQNSTEL RLVTGGASAA TRAASQAQAA RGGGAKATAN ANAARGGAEL NSRSSDLTAA  600
VGGDGDGAGG RAHGGNLLAG IPLPGDANAE ENVPTWGVTL EILQQHFSKH LKQAAKDLGV  660
GSTTLKRICR RYGITRWPRR SLKSKQGKLQ QVLKSLYTGD GAAEASPQGG GDASLARASG  720
GGGESAMSLG TRDSFMTDPT SGGDGANDAS VHGPSGGGGW GVGVGGSLPH GGGLSPLTRH  780
DSITSSPLSG RPACPPVGGL AGGHNLSGLK RALAADQNPW GGGGVGMPRP GNAGGRPGGD  840
GDGVGVGKFQ RGFSWHGGDV ARRALHNDAE TRGEWTLHGE LTFAQLGGGP GRAGYPEQGA  900
AAHPSSAWPI PGASHDRGGH HGGAGPTNED LKDAADADAD TAGARARATA AGPSGGTTTS  960
DDGGGSSFDA DSSGKTSLLS PSECAAAAGG AGVVFKASIC GDGDGGGGLL RARLLGDVTR  1020
AALVDRLALC LRPRDPAEPG AGEKPGFKIK YQDDEDEWCL LSKDSDLEEA IAFAKQRRER  1080
AAASGTAADL ATALGHVRLK IEGASPSPTA AASALDRRAD DVPARGGGTP LSAARACGAS  1140
DTTFTAKISL GDGDTMRVKL VPGMSFRDLA SVVTEASGGA AARRPATPTL TYTDDADESC  1200
DLRGDADLDE CRAACARSGT IRVRATFGGG GDQRLRV*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003058325.1	0.0	nit2-like protein 2
TrEMBL	C1MRL0	0.0	C1MRL0_MICPC; Nit2-like protein 2
STRING	XP_003058325.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5474	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	2e-26	Nin-like family protein

Link Out ? help Back to Top
Phytozome	39571
Entrez Gene	9683385

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]