PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

39559

Common Name

MICPUCDRAFT_39559

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Nin-like

Protein Properties

Length: 410aa MW: 43728.8 Da PI: 8.3949

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
39559	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	64.8	1.3e-20	21	67	4	50
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkik 50 i+l++l+++F++++kdAA++Lgv++T+LKr+CR++GI+ WP+R +k 39559 21 GITLQMLERHFDKNLKDAARDLGVGMTTLKRTCRHFGIAKWPRRTLK 67 599*****************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.857	4	89	IPR003035	RWP-RK domain
Pfam	PF02042	6.7E-18	22	67	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	2.6E-15	323	406	No hit	No description
SuperFamily	SSF54277	5.56E-11	323	406	No hit	No description
SMART	SM00666	9.1E-6	326	409	IPR000270	PB1 domain
Pfam	PF00564	1.2E-6	326	407	IPR000270	PB1 domain
CDD	cd05992	9.66E-13	327	406	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MPADPNLPGR EDNTMSPPPS GITLQMLERH FDKNLKDAAR DLGVGMTTLK RTCRHFGIAK 60 WPRRTLKCKR EKLQEALETL RSEGAATASP DGRVGVTIDG AFHGVNVCAR GFAMIPGRPL 120 DRTPEDDPSA RDSTRKWIRV GATSPRAEVA VRRERERERD DERQYDRSRL GPSADGAAPA 180 PAFAGFKRTR MSDTQFAGVD AWGAPSHPKA KVGGDEGGRA SSFAHLSRPA ALAATGGVSF 240 ANLPDDSDEE TLSADEMRRG AAPDASPRAS HVHLKLDGDR GAAAAGGGGA FAFASTPGDA 300 RRRGRVRGLG GSWASAAFAV GAHETTFTVK ASVGRDVVRF TLPPSATTFE DVASRIEDSL 360 DDGKRVLRFK YADESDETCV LAGDADLDEC RAAHALAGKS TMRLHCELR*

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MPADPNLPGR EDNTMSPPPS GITLQMLERH FDKNLKDAAR DLGVGMTTLK RTCRHFGIAK  60
WPRRTLKCKR EKLQEALETL RSEGAATASP DGRVGVTIDG AFHGVNVCAR GFAMIPGRPL  120
DRTPEDDPSA RDSTRKWIRV GATSPRAEVA VRRERERERD DERQYDRSRL GPSADGAAPA  180
PAFAGFKRTR MSDTQFAGVD AWGAPSHPKA KVGGDEGGRA SSFAHLSRPA ALAATGGVSF  240
ANLPDDSDEE TLSADEMRRG AAPDASPRAS HVHLKLDGDR GAAAAGGGGA FAFASTPGDA  300
RRRGRVRGLG GSWASAAFAV GAHETTFTVK ASVGRDVVRF TLPPSATTFE DVASRIEDSL  360
DDGKRVLRFK YADESDETCV LAGDADLDEC RAAHALAGKS TMRLHCELR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003058318.1	0.0	nit2-like protein 3
TrEMBL	C1MRJ6	0.0	C1MRJ6_MICPC; Nit2-like protein 3
STRING	XP_003058318.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP5474	6	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-11	NIN like protein 7

Link Out ? help Back to Top
Phytozome	39559
Entrez Gene	9683378

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]