PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

21861

Common Name

MICPUCDRAFT_21861

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 169aa MW: 18944.8 Da PI: 11.4773

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
21861	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	81.4	5.9e-26	42	92	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +ri +++nrqvtf+kR+ng++KKA ELSvLCd ++a++if s++kl+ yss 21861 42 ERIADERNRQVTFTKRKNGLMKKAMELSVLCDCQIALVIFNSNNKLFQYSS 92 699**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.8E-32	34	93	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	27.964	34	94	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.31E-29	35	105	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.25E-35	35	106	No hit	No description
PROSITE pattern	PS00350	0	36	90	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-25	36	56	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.2E-25	43	90	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-25	56	71	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-25	71	92	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009553	Biological Process	embryo sac development
GO:0010094	Biological Process	specification of carpel identity
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048366	Biological Process	leaf development
GO:0048455	Biological Process	stamen formation
GO:0048459	Biological Process	floral whorl structural organization
GO:0048497	Biological Process	maintenance of floral organ identity
GO:0048509	Biological Process	regulation of meristem development
GO:0048833	Biological Process	specification of floral organ number
GO:0080060	Biological Process	integument development
GO:0080112	Biological Process	seed growth
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MLDRRSLPPP RPRPLVFPPL TRDPTPYRPV AAAVGRKKIR IERIADERNR QVTFTKRKNG 60 LMKKAMELSV LCDCQIALVI FNSNNKLFQY SSGDINHVLT RFKNDTVGPH ERRNNKDVRE 120 RANARAGVDF SSSFSFGPFS VFTDAFSSPL AVGLPSLATR TPSITHHI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	1e-36	35	125	1	90	Myocyte-specific enhancer factor 2A
3kov_B	1e-36	35	125	1	90	Myocyte-specific enhancer factor 2A
3kov_I	1e-36	35	125	1	90	Myocyte-specific enhancer factor 2A
3kov_J	1e-36	35	125	1	90	Myocyte-specific enhancer factor 2A
3p57_A	1e-36	35	125	1	90	Myocyte-specific enhancer factor 2A
3p57_B	1e-36	35	125	1	90	Myocyte-specific enhancer factor 2A
3p57_C	1e-36	35	125	1	90	Myocyte-specific enhancer factor 2A
3p57_D	1e-36	35	125	1	90	Myocyte-specific enhancer factor 2A
3p57_I	1e-36	35	125	1	90	Myocyte-specific enhancer factor 2A
3p57_J	1e-36	35	125	1	90	Myocyte-specific enhancer factor 2A
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003063080.1	1e-120	predicted protein
Swissprot	A2VDZ3	1e-33	MEF2A_BOVIN; Myocyte-specific enhancer factor 2A
TrEMBL	C1N4Z2	1e-119	C1N4Z2_MICPC; Predicted protein
STRING	XP_003063080.1	1e-119	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP3656	13	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42830.1	7e-23	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	21861
Entrez Gene	9688520

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]