PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

199087

Common Name

MICPUCDRAFT_41764

Organism

Micromonas pusilla CCMP1545

Taxonomic ID

564608

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

MYB_related

Protein Properties

Length: 875aa MW: 91435.7 Da PI: 6.2674

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
199087	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40	8.9e-13	13	63	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqky 47 rg W +eE+ l dav+++G g+W++ + + kgRt+ q+k++w+++ 199087 13 RGYWDEEEENALRDAVQKHGIGSWEKMRHDEQfkvlKGRTGVQLKDKWRNL 63 899*********************999999***************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.256	1	68	IPR017930	Myb domain
SMART	SM00717	1.5E-9	12	66	IPR001005	SANT/Myb domain
Pfam	PF00249	9.7E-10	13	63	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-14	13	70	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.03E-14	14	71	IPR009057	Homeodomain-like
CDD	cd11660	1.60E-16	16	65	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence Send to blast
MPKASADPVT PFRGYWDEEE ENALRDAVQK HGIGSWEKMR HDEQFKVLKG RTGVQLKDKW 60 RNLIKFQHLR RGEAESAPYK SGARGPAPGS SKKRKADDDS KKKNASRDAG KGAKGVKGAK 120 KLTAKEKKAA AAKEAAAAKR EKARATAAKT ARTQDAVRRN QEALAKKLEA STKAAKKGGP 180 GGPGVKTAAG AGGASAADED NKKPTWGGPK KRFKTAYHDA EDAGGGATDE KGGAVTSAAA 240 AALSEATEAS RAAERALREA NAAVAESQRE REGAVAAVTS AEQVLIAVKT SVEDAEAMYN 300 NVREELARMH AYDHEEHDEH EEHEDDWDKY LHFGDGGEEK EKDGGDASPK RKTPRNSMRS 360 TMPAGAAGGA GAAATPAEPG AAAPEGVVVT AAEAEAAETA ARQFHALRGG MKDVETTHAA 420 NTAQASAADA AHHGGHAHHG GHHGFQPSLQ EAEQFLLSEL KKLEAANAAL MSARARLAEI 480 DRRLAAAIQR VGECEMRARR ERERVATLAA GAKAAGGGGG GGGAWGVEGG LDELDDDDDD 540 EEEEEEEEDS EEDSEEVERA AKKARRASHK EGGTSGGGGK VIEDRRFGIY DSRRYRMEGE 600 PAPPDPSDDE DSGPPYRSHE PATRGRPPGS GKGRKSAPSG ASRGAQEEKA GGKKKYLSHH 660 RDGTKLSSDI EVKPPSKGAR ARGYNGGRGG GAAAGAARGP GRPTRASAEV AAEAAAAAAA 720 DKHQGFRFKG DERLNARAGR SFVDSNAGVR SSGAWKMKRR RTRQAIGRPA VGPTSWAAVC 780 SNALWRVGEL EAAIARDDGD DGDGDGDEGG GSRMGGFGFG FGRGGGGGAD GDETSSEADS 840 DDGGFEGEDE GDLGMVLDLQ FDDELGWEND VALL*

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence Send to blast

MPKASADPVT PFRGYWDEEE ENALRDAVQK HGIGSWEKMR HDEQFKVLKG RTGVQLKDKW  60
RNLIKFQHLR RGEAESAPYK SGARGPAPGS SKKRKADDDS KKKNASRDAG KGAKGVKGAK  120
KLTAKEKKAA AAKEAAAAKR EKARATAAKT ARTQDAVRRN QEALAKKLEA STKAAKKGGP  180
GGPGVKTAAG AGGASAADED NKKPTWGGPK KRFKTAYHDA EDAGGGATDE KGGAVTSAAA  240
AALSEATEAS RAAERALREA NAAVAESQRE REGAVAAVTS AEQVLIAVKT SVEDAEAMYN  300
NVREELARMH AYDHEEHDEH EEHEDDWDKY LHFGDGGEEK EKDGGDASPK RKTPRNSMRS  360
TMPAGAAGGA GAAATPAEPG AAAPEGVVVT AAEAEAAETA ARQFHALRGG MKDVETTHAA  420
NTAQASAADA AHHGGHAHHG GHHGFQPSLQ EAEQFLLSEL KKLEAANAAL MSARARLAEI  480
DRRLAAAIQR VGECEMRARR ERERVATLAA GAKAAGGGGG GGGAWGVEGG LDELDDDDDD  540
EEEEEEEEDS EEDSEEVERA AKKARRASHK EGGTSGGGGK VIEDRRFGIY DSRRYRMEGE  600
PAPPDPSDDE DSGPPYRSHE PATRGRPPGS GKGRKSAPSG ASRGAQEEKA GGKKKYLSHH  660
RDGTKLSSDI EVKPPSKGAR ARGYNGGRGG GAAAGAARGP GRPTRASAEV AAEAAAAAAA  720
DKHQGFRFKG DERLNARAGR SFVDSNAGVR SSGAWKMKRR RTRQAIGRPA VGPTSWAAVC  780
SNALWRVGEL EAAIARDDGD DGDGDGDEGG GSRMGGFGFG FGRGGGGGAD GDETSSEADS  840
DDGGFEGEDE GDLGMVLDLQ FDDELGWEND VALL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003061570.1	0.0	predicted protein
TrEMBL	C1N1J8	0.0	C1N1J8_MICPC; Predicted protein
STRING	XP_003061570.1	0.0	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4131	7	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67580.2	5e-09	MYB_related family protein

Link Out ? help Back to Top
Phytozome	199087
Entrez Gene	9687274

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]