PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 195658 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | NF-YA | ||||||||
Protein Properties | Length: 217aa MW: 23294.8 Da PI: 9.6487 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 99.6 | 3.3e-31 | 86 | 142 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RR++Rak+e+e++l +ksrkpylheSRh+hA rR+Rg gGrF 195658 86 EEPVYVNAKQYHGILRRRAARAKAESENRL-IKSRKPYLHESRHNHARRRERGAGGRF 142 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.3E-34 | 84 | 145 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.094 | 85 | 145 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 7.2E-27 | 87 | 142 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.7E-23 | 88 | 110 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 90 | 110 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.7E-23 | 119 | 142 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010262 | Biological Process | somatic embryogenesis | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0055046 | Biological Process | microgametogenesis | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MQVQAPQGGV VEYATNDGSG AAAQGQDYMR SAYAYDPYMA YGGVVAYGQQ TVVAPHVMGG 60 LQARSISHWS PYDRSARMML PSEMEEEPVY VNAKQYHGIL RRRAARAKAE SENRLIKSRK 120 PYLHESRHNH ARRRERGAGG RFLTKKELEE RDRLAKAKEG GGDGGDAADA DANANANAKE 180 GGGADADAGG DDAGDKETPS KEKDAPAKKT AKKGKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 8e-22 | 86 | 147 | 2 | 64 | HAPB protein |
4g92_A | 8e-22 | 86 | 147 | 2 | 64 | HAPB protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003063636.1 | 1e-62 | predicted protein | ||||
Swissprot | Q945M9 | 2e-31 | NFYA9_ARATH; Nuclear transcription factor Y subunit A-9 | ||||
TrEMBL | C1N6Y9 | 3e-61 | C1N6Y9_MICPC; Predicted protein | ||||
STRING | XP_003063636.1 | 5e-62 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP9541 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.1 | 7e-13 | nuclear factor Y, subunit A7 |
Link Out ? help Back to Top | |
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Phytozome | 195658 |
Publications ? help Back to Top | |||
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