PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 195352
Common NameMICPUCDRAFT_52654
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family MYB_related
Protein Properties Length: 760aa    MW: 81149.3 Da    PI: 8.9775
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
195352genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-07679735148
                      TSSS-HHHHHHHHHHHHHTTTT......-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg......tWktIartmg...kgRtlkqcksrwqkyl 48 
                      r+rWT+eE++ l ++ +++ ++      +W +I  +       Rt  ++k++w++ +
           195352 679 RQRWTAEEEDCLRKGMAEFNPPgkegptDWISILDKYDtvmIDRTSMDLKDKWRNMK 735
                      89******************99*******************88***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.959542605IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.9E-6543608IPR009057Homeodomain-like
SuperFamilySSF466896.98E-8545640IPR009057Homeodomain-like
SMARTSM007170.0037546607IPR001005SANT/Myb domain
CDDcd116602.45E-9549605No hitNo description
PROSITE profilePS500907.224674735IPR017877Myb-like domain
SuperFamilySSF466891.64E-10676736IPR009057Homeodomain-like
SMARTSM007174.7E-4678737IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-8679737IPR009057Homeodomain-like
CDDcd116602.96E-10680736No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 760 aa     Download sequence    Send to blast
MPPRKAPAAA KRKPVDDATL WVVEHAAAVG IDNDVLLDLL DAAKGATRSG EMPARIAQRL  60
SLQMLSDAVE KKEPVSAKTC KLLAKLAPLE SLTDDSEELE PRVRMCAEAA CLARSKGWPA  120
FKLAIDDMFP PRVNLAKLAK AARDDLLSAH KRCKSPGASE KPFNAARKKH GAHKADSAAA  180
RKDLASVVSA HAATLGSTSL QRLIEDITAG AYIPPPGVPK ATLAGVRVGS PGTRRAAAAA  240
DDDGGGGATG GERRKSMLRT PTKKTKNKRA REEEEAVEIE KADDDAGDED DVYAPPADDA  300
GDPWNRLAMA AVSPSPSQKK KQKEALAKVV AASPAAKRAK IGAGEPKPST PVGRVVNALA  360
PGLWRRRALG LAKEPEHKRF NSDGEEEEED DDDDDAFGIM PTQAAPTEED LEAEAKSKSA  420
KQPGFLSRVF GGRKKDADAA GTLAEDADYA PPGGGGGSSS DDDDDDDDES LKKRLLASPG  480
GGFYGGTPRK SRGGPPLIPK PLGVANRHSN ARGGTIKAAR SAGNTPGGST PGGAGGGAGI  540
APQKKERTPW AEEDVDFLLE GYEKFGPDGE DSKTMWADIL IAGMKQNLFK DRTSMDLKDK  600
YRNIKIKRAR EAANALEEEE EGGGGLWTLI AGKKRRRRSM NKIKNAITGE LERRPGKANR  660
HSNFAHTSGV TQEGVRKMRQ RWTAEEEDCL RKGMAEFNPP GKEGPTDWIS ILDKYDTVMI  720
DRTSMDLKDK WRNMKKKMDK ERADRIAAAL ADAGEEASS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1632637KKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003062837.10.0predicted protein
TrEMBLC1N4R40.0C1N4R4_MICPC; Predicted protein
STRINGXP_003062837.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1503622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-07telomere repeat binding factor 1
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]