PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 195113
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family CO-like
Protein Properties Length: 720aa    MW: 72597.4 Da    PI: 8.5092
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
195113genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.93.6e-07335436
  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
              ++C+ +   ++++fC+ ++  lC++C  + H+ 
    195113  3 NVCDYCAVAPAIIFCRADSAKLCAQCDASVHSA 35
              79***************************9954 PP
2CCT52.91.4e-18628671144
     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
             R+  l RY eKr +R+F+KkirY+sRK++A++R R+KGrF++++
  195113 628 RKDMLARYHEKRMRRLFKKKIRYASRKVRADNRVRIKGRFARAD 671
             88899************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-11147IPR000315B-box-type zinc finger
PROSITE profilePS501199.599147IPR000315B-box-type zinc finger
CDDcd000214.71E-7447No hitNo description
PfamPF062037.3E-15628670IPR010402CCT domain
PROSITE profilePS5101714.168628670IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MSNVCDYCAV APAIIFCRAD SAKLCAQCDA SVHSANQLSR RHVRSWLCDG CYASSATVSN  60
PDDKVVMCGP CDTLARSADM FKQSRTDHRR ETLKSFSLAE DAGEDSYDGG VDLARHPFKS  120
QYTLRGGVTS GDASGGGVKV EHDNSREGSA PAPGDGGMGD AGAGSYDGFN RPRVGIAPPR  180
QGAPGVANVG QFYGGAPYFG GGVAGGPAPA PGPGPLAREH HNARTQWPAP GSAWPAPGRA  240
SPRSSAHLEP WNAAAGPYGG SNANGVGTGG QTGGQTGEPG VDYLQRMGSG SSIYSDMGGV  300
IAQWGTNPSA HAALMRTPSD PIDMFMNFNA SQGGLSPTTS EGAGGGGGGG FGATARYGDS  360
TGFGVGGPSG AGMGMPPVGG YPVAAFAHAP PYAYQPPQPL TRGPPSSGEM VGGGGGGDTS  420
ARSASPPSGA GGELYRDKRA SNNSSGYGSG GSHYNLVALS SQQPGSFQHA PGQPGLHAPA  480
HSGGQPIGYA PPPLNAHHHH HHHHSGVGPG PGSSGGFYPP YGASVADGMY AQGPYNPHGV  540
PPPMHFSSRP GSYSGGLAHG YRSGSGGSDN GGLSNRGSYG DGGGNSSGDG SGSKQVGGKD  600
GAGVDSARSG DSANTRAHGS MAPGTAGRKD MLARYHEKRM RRLFKKKIRY ASRKVRADNR  660
VRIKGRFARA DAPIAAIDKS SVHKHKDVVK AEEIPIDGDG EETEAGPLAT PAIPPGACA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003062280.10.0predicted protein
TrEMBLC1N2X10.0C1N2X1_MICPC; Predicted protein
STRINGXP_003062280.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP705433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.28e-19B-box type zinc finger protein with CCT domain