PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 190190
Common NameMICPUCDRAFT_52395
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C3H
Protein Properties Length: 553aa    MW: 57546.3 Da    PI: 8.871
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
190190genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.3e-07404424425
              ---SGGGGTS--TTTTT-SS-S CS
  zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
              + Crff+r G+Ck G++C+F+H
   190190 404 RTCRFFLR-GQCKSGAKCRFSH 424
              78******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF104532.2E-5239269IPR019496Nuclear fragile X mental retardation-interacting protein 1, conserved domain
PROSITE profilePS5010316.042400427IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4402426IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.06E-5403425IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-6404430IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-5404424IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MQPTPPPGGA YPPGHHQPPP PGYQMMYVMP TANGGYQYLQ PEQTMGGQQR QHHHHWATAA  60
PPPAPSAPAW GQPAAMQWGS QMATANANAN ANANANAPSS RGNWYGGGPR PPPPRETTTT  120
TTTSCYRFRD GSAVGGGPVA PPPAPASAPA PPTTTTKRSG EGKGGEPSGD DARGDGDADP  180
NSIDRAKKGG TPASAPPPPP PADAKKTERQ PSKPTEKGVT FPTIDEIPVV KPVDVASLPE  240
DVRAYRAERA KNWPSSAAVD AKRRRAAEKG AFIFTLVPIR PPSRGEACDD DGGADAARRA  300
RLKEVLAAQR ALGHYDASEE IGDVDGGGGG GGGRGRGGGG RGKGGGRGIK GRGRKRGARD  360
DDDDDDDDGG KAKAPRREGG DAHDGDGGGD GGDGDGGTGA KTPRTCRFFL RGQCKSGAKC  420
RFSHERPERK NKPGKGGRGQ GGGGGGGGGA HGNQPQRPPQ PTLLKKLFAK EVRVSRSRLL  480
QVFRFLVNNN FLRDAEKAET EKLWMFPFVD AAPADVKTKL KELATAPDVE DDEDIDDVAD  540
EDVPDPEEPG RA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1435443GGRGQGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003062478.10.0predicted protein
TrEMBLC1N4370.0C1N437_MICPC; Predicted protein
STRINGXP_003062478.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP578177
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]