PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 187228
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family NF-YB
Protein Properties Length: 163aa    MW: 16898.1 Da    PI: 4.4436
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
187228genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB52.11.6e-16591490
   NF-YB  4 qdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90
             +  lP + v++++++ lP   k+++d k+++ e   efi  v++eas+ + +e + ti+++ ++ al  l f+ y+ +++   ++ 
  187228  5 GEGSLPRSSVVKLINQNLPPGLKMGNDVKDMILEACNEFIQAVSGEASEISDKEGKTTITPEHVVKALEALEFDAYLPAVNEVWEEE 91
            56689***********************************************************************99988766555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.2E-303135IPR009072Histone-fold
SuperFamilySSF471132.9E-268133IPR009072Histone-fold
PfamPF008081.6E-13872IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MAEEGEGSLP RSSVVKLINQ NLPPGLKMGN DVKDMILEAC NEFIQAVSGE ASEISDKEGK  60
TTITPEHVVK ALEALEFDAY LPAVNEVWEE EKKLDAEQRE VKKTKKKAAA NAMSAEEALA  120
LQTKMFAEAK ARYAAGDAGG PGPGPGGGPG PGGGPAPPPS LE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B3e-22813015133Transcription Regulator NC2 beta chain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003059647.14e-85predicted protein, partial
TrEMBLC1MVD21e-83C1MVD2_MICPC; Predicted protein (Fragment)
STRINGXP_003059647.12e-84(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP24221515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.46e-23nuclear factor Y, subunit B13