PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

16466

Common Name

MICPUCDRAFT_16466

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla

Family

Protein Properties

Length: 112aa MW: 12616 Da PI: 10.0471

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
16466	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.1	3.8e-13	43	106	1	64
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 ++++k +rrk+ NRe+Arrs qRKk+e e L k++eL +e +L+ +le+ +k+++kl +e++ 16466 43 DRDVKTQRRKEANRESARRSKQRKKEESELLSSKAQELVKESVSLRAKLEKVQKQADKLYAENM 106 5899*******************************************************99886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.8E-9	43	101	No hit	No description
SMART	SM00338	2.0E-10	43	107	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.2E-11	44	106	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.634	45	108	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.56E-8	47	102	No hit	No description
CDD	cd14702	6.50E-10	49	99	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 112 aa Download sequence Send to blast
MGAYNNVSGS QPYWYTHGAY PEGANGAGVN GGTSNEVSIA LRDRDVKTQR RKEANRESAR 60 RSKQRKKEES ELLSSKAQEL VKESVSLRAK LEKVQKQADK LYAENMELRE QV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	65	RRSKQRK
2	59	67	RRSKQRKKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003058061.1	4e-76	predicted protein, partial
TrEMBL	C1MQ43	9e-75	C1MQ43_MICPC; Predicted protein (Fragment)
STRING	XP_003058061.1	2e-75	(Micromonas pusilla)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9223	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32150.1	3e-16	basic region/leucine zipper transcription factor 68

Link Out ? help Back to Top
Phytozome	16466
Entrez Gene	9683005

Publications ? help Back to Top
Worden AZ, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science, 2009. 324(5924): p. 268-72 [PMID:19359590]