PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 156055
Common NameMICPUCDRAFT_57902
Organism
Micromonas pusilla CCMP1545
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family C3H
Protein Properties Length: 367aa    MW: 39809.3 Da    PI: 9.8586
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
156055genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.43.3e-10246267526
              --SGGGGTS--TTTTT-SS-SS CS
  zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
              +Cr++ar G C++Gd C+F Hg
   156055 246 PCRHWARDGRCPRGDECPFQHG 267
              8********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.76241269IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-5242268IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-6244267IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7245267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-6245267IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MSKRSREGGD ASAAAAATKK EGKRERRARP GSTNTRPQVD ETKSPSASNN ATSAPTATTR  60
GGHHPVEPPH SIDAARDRDR DRDRDRDRDP ADDCETPAVA YAHLAPILRK LAQRLKKPPS  120
ELAVYDPYRC AGAVESRLGA LGFDAVANPA DDFYAALEED RVPPHDVLVT NPPFSGEHAR  180
RLVSFLASTR YSRKRAFCFL APEYVHRKAW YAAMTRARPD VCYLVPKERY AFVASSGGRR  240
ENTAKPCRHW ARDGRCPRGD ECPFQHGGGG GSGASTSSED APVARGGGAS SSVTGTRTVV  300
APFDCIWHVH AGEGRQRSVV AAWRQKYGGG DGKKEDALGA RLVERAEDLP PPPPRLKRAR  360
AIETRE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430ERRARPG
27787RDRDRDRDRDR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003058415.10.0predicted protein
TrEMBLC1MT130.0C1MT13_MICPC; Predicted protein
STRINGXP_003058415.10.0(Micromonas pusilla)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1497322
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]