PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 150835 | ||||||||
Common Name | MICPUCDRAFT_55652 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
|
||||||||
Family | LSD | ||||||||
Protein Properties | Length: 134aa MW: 14044.1 Da PI: 7.7961 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 26.7 | 9.6e-09 | 34 | 58 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C++ L+Y GA sV C++C+ + 150835 34 CGSCHIQLMYRSGAASVSCTVCNSI 58 **********************975 PP | |||||||
2 | zf-LSD1 | 30.9 | 4.6e-10 | 68 | 91 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 CggCr +L Y +GA sV+Ca C+ 150835 68 CGGCRMMLKYSAGALSVQCAACQY 91 **********************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 4.9E-4 | 7 | 21 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.90.10.10 | 6.1E-4 | 9 | 89 | No hit | No description |
SuperFamily | SSF48695 | 2.84E-7 | 10 | 89 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 4.9E-7 | 32 | 59 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 2.9E-8 | 34 | 58 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.8E-9 | 67 | 93 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.1E-9 | 68 | 92 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 134 aa Download sequence Send to blast |
CKFFTSQGAA YVQCALCHTV TPAPSSEDIA WLTCGSCHIQ LMYRSGAASV SCTVCNSITA 60 APVRYCQCGG CRMMLKYSAG ALSVQCAACQ YITVTIFTRG KRGANMVVVE NPPTLDENGH 120 VKNSTSVGLA EDS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003056530.1 | 1e-89 | predicted protein | ||||
TrEMBL | C1MLB2 | 2e-88 | C1MLB2_MICPC; Predicted protein | ||||
STRING | XP_003056530.1 | 4e-89 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP4613 | 11 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G20380.7 | 4e-20 | LSD family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | 150835 |
Entrez Gene | 9681777 |
Publications ? help Back to Top | |||
---|---|---|---|
|