PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 11841 | ||||||||
Common Name | MICPUCDRAFT_11841 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
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Family | NF-YB | ||||||||
Protein Properties | Length: 57aa MW: 6509.33 Da PI: 4.4628 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 40 | 9.4e-13 | 1 | 56 | 29 | 84 |
NF-YB 29 kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 k+a + ec+ fi ++t+ a+d c+ kr+ti+ dd++ a+ +l f ++ epl+ 11841 1 KEALQAFSECAKIFIHYLTATANDICRDGKRQTISVDDVFKAIDELEFGEFSEPLR 56 57888999*********************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.8E-21 | 1 | 56 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.0E-17 | 1 | 56 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.4E-9 | 1 | 43 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 57 aa Download sequence Send to blast |
KEALQAFSEC AKIFIHYLTA TANDICRDGK RQTISVDDVF KAIDELEFGE FSEPLRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003054988.1 | 3e-35 | predicted protein, partial | ||||
TrEMBL | C1MHN8 | 6e-34 | C1MHN8_MICPC; Predicted protein (Fragment) | ||||
STRING | XP_003054988.1 | 1e-34 | (Micromonas pusilla) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Chlorophytae | OGCP3453 | 13 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 2e-24 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | 11841 |
Entrez Gene | 9681052 |
Publications ? help Back to Top | |||
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