PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MapolyY_B0018.18.p
Organism
Marchantia polymorpha
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
Family bHLH
Protein Properties Length: 621aa    MW: 69868.6 Da    PI: 5.7337
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MapolyY_B0018.18.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-13436482455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h ++Er+RR+++N++f  Lr+++P+       K++Ka+ L  A+ YI++Lq
  MapolyY_B0018.18.p 436 NHVQAERQRREKLNQRFYALRSVVPNV-----SKMDKASLLGDAIAYIQELQ 482
                         6999**********************6.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.3E-4741197IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.00E-15430486No hitNo description
PROSITE profilePS5088817.358432481IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.18E-18435497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-11436482IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-18436493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-17438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043425Molecular FunctionbHLH transcription factor binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MVQKARRFFG CTFHDVQYQI LRAHLEEQRS IGGFIHLYLE QRVLGWGDGY FKGPKESENA  60
DPRGTEKDQT CREEDQLIRR KVLRELQALV CTGEDDTTAS TGLDYVTDTE WFYLVSMSYF  120
FSHGVGTPGQ ALASGEYVWL LEANKAPSHV CTRADLAKMA GIQTIACIPT KNGVVELGST  180
ELIFESWEVI NNIKEFFSEG IFEQSRRYQK PHLSSGKIGA MGCTHVTYPT GIDISNDVIS  240
NSCVKCNTFD KLNASSLPSN VDSLDYLFSD DASLVEIPLE TDKNHMQPVG VPTLQSRLII  300
EEDKTAVFSK PLYLSLDQGR TAVSETGEIL NPPEMTLNLR RSENQLQQKD SKFYLKKETM  360
SVDSQSKDRA GESANHQVVD AKGVSLPSFV GRSSIESEQD VDSEAEVSYK DVVLVEQKPP  420
RKRGRKPAHD REEPLNHVQA ERQRREKLNQ RFYALRSVVP NVSKMDKASL LGDAIAYIQE  480
LQQKLQIMEL KCQSVPSSGR PSTSNHRGSR SHLDYSAQTG NTRSLHSYIY ILDQKPNVDV  540
ELLGMEVMVR VNHLSEAYPT SQLMFALQDL QLEVQHANIS TVEDRIFHLV IAKDRILFYS  600
SSNPYECEEC ADKGATPWCH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-254319846193Transcription factor MYC3
4rqw_B3e-254319846193Transcription factor MYC3
4rs9_A3e-254319846193Transcription factor MYC3
4yz6_A3e-254319846193Transcription factor MYC3
5gnj_A3e-26431485357Transcription factor MYC2
5gnj_B3e-26431485357Transcription factor MYC2
5gnj_E3e-26431485357Transcription factor MYC2
5gnj_F3e-26431485357Transcription factor MYC2
5gnj_G3e-26431485357Transcription factor MYC2
5gnj_I3e-26431485357Transcription factor MYC2
5gnj_M3e-26431485357Transcription factor MYC2
5gnj_N3e-26431485357Transcription factor MYC2
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00086PBMTransfer from AT4G17880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6VWS60.0A0A2R6VWS6_MARPO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.12e-46bHLH family protein