PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MapolyY_B0018.10.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marchantiales; Marchantiaceae; Marchantia
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Family | bHLH | ||||||||
Protein Properties | Length: 655aa MW: 73115 Da PI: 4.8363 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.7 | 2e-13 | 470 | 516 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ++Er+RR+++N++f Lr+++P+ K++Ka+ L A+ YI++Lq MapolyY_B0018.10.p 470 NHVQAERQRREKLNQRFYALRSVVPNV-----SKMDKASLLGDAIAYIQELQ 516 6999**********************6.....5******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.1E-55 | 50 | 231 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 6.09E-16 | 464 | 520 | No hit | No description |
PROSITE profile | PS50888 | 17.358 | 466 | 515 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.27E-18 | 469 | 531 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.9E-18 | 470 | 527 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.5E-11 | 470 | 516 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-17 | 472 | 521 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009269 | Biological Process | response to desiccation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0009963 | Biological Process | positive regulation of flavonoid biosynthetic process | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0043619 | Biological Process | regulation of transcription from RNA polymerase II promoter in response to oxidative stress | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051090 | Biological Process | regulation of sequence-specific DNA binding transcription factor activity | ||||
GO:2000068 | Biological Process | regulation of defense response to insect | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043425 | Molecular Function | bHLH transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 655 aa Download sequence Send to blast |
MGTDGGLKAA WDEDNAMIEA FVGSGSFDLP FVPPDDVLGG RGLPISETAL QQRLQLLVEG 60 TSLNWTYAIF WQLSYYPNGE MVLGWGDGYF KGPKESENAD PRGTEKDQTC REEDQLIRRK 120 VLRELQALVC TGEDDTTAST GLDYVTDTEW FYLVSMSYFF SHGVGTPGQA LASGEYVWLL 180 EANKAPSHVC TRADLAKTIA CIPTKNGVVE LGSTELIFES WEVINNIKEF FSEGIFEQSR 240 RYQKPHLSSG KIGAMGCTHV TYPTGIDISN DVISNSCVKC NTFDKLNASS LPSNVDSLDY 300 LFSDDASLVE IPLETDKNHM QPVGVPTLQS RLIIEEDKTA VFSKPLYLSL DQGRTAVSET 360 GEILNPPEMT LNLRRSENQL QQKDSKFYLK KETMSVDSQS KDRAGESANH QVVDAKGVSL 420 PSFVGRSSIE SEQDVDSEAE VSYKDVVLVE QKPPRKRGRK PAHDREEPLN HVQAERQRRE 480 KLNQRFYALR SVVPNVSKMD KASLLGDAIA YIQELQQKLQ IMELKCQSVP SSGRPSTSNH 540 RGSRSHLDYS AQTGNTRSLH SYIYILDQKP NVDVELLGME VMVRVNHLSE AYPTSQLMFA 600 LQDLQLEVQH ANISTVEDRI FHLVIAKDRI LFYSSSNPYE CEECADKGAT PWCH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-34 | 45 | 232 | 4 | 193 | Transcription factor MYC3 |
4rqw_B | 1e-34 | 45 | 232 | 4 | 193 | Transcription factor MYC3 |
4rru_A | 3e-34 | 12 | 227 | 12 | 227 | Transcription factor MYC3 |
4rs9_A | 1e-34 | 45 | 232 | 4 | 193 | Transcription factor MYC3 |
4ywc_A | 3e-34 | 12 | 227 | 12 | 227 | Transcription factor MYC3 |
4ywc_B | 3e-34 | 12 | 227 | 12 | 227 | Transcription factor MYC3 |
4yz6_A | 1e-34 | 45 | 232 | 4 | 193 | Transcription factor MYC3 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00086 | PBM | Transfer from AT4G17880 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2R6VWV5 | 0.0 | A0A2R6VWV5_MARPO; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46760.1 | 2e-46 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | MapolyY_B0018.10.p |